GgaEX7006236 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35925277-35929638:+
Coord C1 exon
chr7:35925277-35925427
Coord A exon
chr7:35927508-35927703
Coord C2 exon
chr7:35929554-35929638
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTGTTGATGGGTTGTTACAGGTA
3' ss Score
7
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TTTGCAGCATACATTCGAGCTGCTGTGAGGAAAGAAAAAGGACTGCCAATCCTTGTGGAACTCCTGAGGATGGATAATGATAGAGTCGTTTCATCTGTGGCAACCGCCCTAAGGAACATGGCGTTAGATGTTCGGAATAAGGAGCTCATTG
Seq A exon
GTAAATACGCTATGCGAGATCTGGTGAATCGCCTGCCAGGAGGCAATGGCCCAAGCATACTGTCTGATGAGACCGTAGCAGCAATCTGCTGTGCACTGCATGAGGTCACCAGCAAAAACATGGAGAACGCCAAAGCCCTCGCGGATACTGGGGGAATAGAAAAGCTGGTGAACATAACGAAAGGAAGAGGTGACAG
Seq C2 exon
ATCTTCATTGAAAGTTGTCAAGGCAGCTGCTCAGGTACTGAATACGTTATGGCAGTATCGAGACCTTCGCAGCATTTATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'35-45,'35-43,39-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020513fB2268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCATACATTCGAGCTG
R:
TTCTTATAAATGCTGCGAAGGTCT
Band lengths:
234-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]