BtaEX0027321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013773 | PKP4
Description
Bos taurus plakophilin 4 (PKP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001191491]
Coordinates
chr2:37822230-37829762:-
Coord C1 exon
chr2:37829612-37829762
Coord A exon
chr2:37826356-37826551
Coord C2 exon
chr2:37822230-37822314
Length
196 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTTGTCCTGGGCAGGGA
3' ss Score
8.06
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TTCGCAGCATATATCCGAGCAGCCGTCCGCAAAGAAAAAGGGCTCCCCATCCTAGTAGAGCTTCTGAGAATGGATAACGATAGAGTTGTTTCTTCTGTGGCGACTGCCTTGAGGAATATGGCCCTAGATGTTCGCAACAAGGAGCTCATAG
Seq A exon
GGAAATACGCCATGCGAGACCTGGTCAACCGGCTCCCAGGTGGCGCCAGCCCCAGCGTGCTGTCGGATGAGACCGTGGCGGCCATCTGCTGCGCCCTGCACGAGGTCACCAGCAAGAATATGGAGAACGCCAAGGCTCTGGCTGATTCGGGAGGCATAGAGAAGCTGGTGAACATCACCAAGGGCAGAGGAGACAG
Seq C2 exon
ATCATCTCTGAAAGTGGTGAAGGCAGCAGCCCAGGTCTTGAATACATTATGGCAATATCGGGACCTCCGGAGCATTTATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013773-'28-39,'28-38,30-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGCATATATCCGAGCAG
R:
GGAGGTCCCGATATTGCCATA
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development