DreEX6020983 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:11976593-11978306:-
Coord C1 exon
chr6:11978156-11978306
Coord A exon
chr6:11977843-11978035
Coord C2 exon
chr6:11976593-11976677
Length
193 bp
Sequences
Splice sites
3' ss Seq
TGAATTGGGTTGCTTTGAAGGAA
3' ss Score
5.36
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
TTTGCGTCCTACATCCGCGCTGCTGTACGTAAAGAGAAGGGTTTGCCCATTTTGGTGGAGCTGCTAAGAATGGATAATGACAGGGTGGTCTGCTCTGTGGCTACTGCGTTACGAAACATGGCTCTGGACGCCAGGAACAAAGAGCTCATCG
Seq A exon
GAAAGTACGCCATGCGGGACCTGGTGACCCGTCTGCCTGGCAACGGGCCCTCGCTGCTGTCAGATGAGACGGTGGCGGCGGTTTGCTGTGCGCTGCACGAGGTCACGAGCAGGAACATGGAGAACGCCCGAGCGCTCGCCCAGACCGGCGGCATCGACAAACTGGTTACAATCAGCAGAGGACGCGGAGAGAG
Seq C2 exon
GTATTCCATGAAGGTGGTCAAAGCAGCAGCTCAGGTGCTAAACACTCTCTGGCAGTACAGAGATCTGCGCACCTTCTACAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'23-20,'23-18,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCCGCGCTGCTGTAC
R:
TTTTGTAGAAGGTGCGCAGATCT
Band lengths:
226-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]