RnoEX0066495 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45395102-45414613:+
Coord C1 exon
chr3:45395102-45395285
Coord A exon
chr3:45404377-45404572
Coord C2 exon
chr3:45413529-45414613
Length
196 bp
Sequences
Splice sites
3' ss Seq
TAGTCTTGTGTACCTGGCAGGTA
3' ss Score
5.28
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGGTTCTTTGGAATTTATCCTCATGTGACGCTGTAAAGATGACAATCATTCGAGATGCTCTCTCAACCTTAACCAACACTGTGATAGTTCCACATTCTGGGTGGAATGACTCTTCCTTTGATGATGATCATAAAATTAAATTTCAGACCTCGCTGGTTCTGCGGAACACGACAGGTTGCCTGAG
Seq A exon
GTAAATACGCCATGCGAGACCTGGTCAACAGGCTTCCCGGTGGCAACGGCCCCAGCATCCTGTCCGATGAGACTGTGGCAGCCATCTGCTGTGCTCTGCATGAGGTCACCAGCAAAAACATGGAGAACGCCAAAGCTCTGGCTGACTCGGGAGGTATAGAGAAGCTGGTGAACATAACCAAAGGCAGAGGAGACAG
Seq C2 exon
CACCAACAGCTGTACTATCAAGATGACTCCACCAGGAAGACCTTGGATGCTTACAGACTGTACCTGCAGTCTCCTCGCAGCTATGAAGACCCTTACGGTGATGACCGAGTTCACTTCCCAGCTTCTACTGATTACTCAACGCAGTATGGACTGAAATCAACCACAAATTACGTAGACTTTTACTCCACTAAACGACCTTCTTATAGAGCCGAACAGTACCCTGGGTCCCCGGACTCCTGGGTGTAGCATCAAGACGGCTGCCTGCCGAGGGCCGATTTTCTTCTGACTCTGCTTGGACTGAGGGGAGTCCGTCTTGCTGATGATGGTGACCGTGAAAGTGAAGTGGAAGGGATGAGTGAAGAGGTTTTGTTTGTTTTTTTTTTTTCTTTTTTGAGGAATTTTCAGGGAAGTGAAGAAACCCTTGGGAGAGGACTTTCTACGCTCTGTGTAGGTGTTAGATCTAATTACTTGTAGATTCTAGTGGTGAAGGTGTGGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_MULTIEX2-5/9=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.543
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACGACAGGTTGCCT
R:
CCAGGGTACTGTTCGGCTCTA
Band lengths:
246-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]