MmuEX6101437 @ mm10
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59311694-59322715:+
Coord C1 exon
chr2:59311694-59311913
Coord A exon
chr2:59318512-59318644
Coord C2 exon
chr2:59322502-59322715
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTCTCTTCCACGTAGGGA
3' ss Score
9.23
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
TAGGTATTGGAAATCTACAAAGGACATCCAGCCAGCGAAGCACCCTTACATACCAAAGAAATAACTATGCCCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCAGTTCAGTACCGAGTCCAAGAGTGCAGCTATAACAGGCTGCAGCACACAGGGCCAGCTGATGACGGTGCCACAAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
Seq A exon
GGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCAGCACCAGTTCCCATCGGTCCAGGCAAATGCCGCAGCCTACCTGCAGCATCTGTGCTTTGGTGACAACAAAGTGAAGATGGAG
Seq C2 exon
GTGTACAGGCTAGGGGGAATCAAGCATCTGGTCGACCTGTTGGACCACAGGGTGTTGGAAGTTCAGAAGAATGCTTGTGGCGCCCTTCGAAACCTTGTGTTTGGCAAGTCAACAGACGAAAATAAAATAGCAATGAAGAACGTTGGTGGAATCCCTGCCTTGCTGCGACTGTTAAGAAAATCCATTGATGCAGAAGTAAGGGAGCTTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-'30-43,'30-42,33-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATAACAGGCTGCAGCACA
R:
CAAGGCAGGGATTCCACCAAC
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types