BtaEX0027325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013773 | PKP4
Description
Bos taurus plakophilin 4 (PKP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001191491]
Coordinates
chr2:37858278-37929695:-
Coord C1 exon
chr2:37929564-37929695
Coord A exon
chr2:37859600-37859732
Coord C2 exon
chr2:37858278-37858491
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCCGTGTTTTTCTCTTGCAGGGA
3' ss Score
12.91
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATGCCAGCTCCTGAACAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCCGGCATGGAACCCGAGACTACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAG
Seq A exon
GGAGTTTGCCTGGCGTGATCCTGAGTTGCCTGAAGTCATCCACATGCTGCAGCACCAGTTCCCGTCAGTTCAGGCAAACGCAGCGGCCTACCTGCAGCACCTGTGCTTCGGTGACAACAAAGTGAAGATGGAG
Seq C2 exon
GTGTGTAGGTTAGGGGGAATCAAGCATCTGGTTGACCTTTTGGACCACAGAGTTTTGGAAGTTCAGAAGAATGCTTGTGGTGCCCTCCGAAACCTTGTTTTCGGCAAGTCTACAGATGAAAATAAAATAGCAATGAAGAATGTTGGCGGGATACCTGCCTTGTTGCGACTGTTGAGAAAATCTATTGATGCAGAAGTAAGGGAGCTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013773_MULTIEX2-5/6=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PD(87.8=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
ENSBTAT00000018330fB5276
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGACTACAGCCACCACTA
R:
ACCAGCTCCCTTACTTCTGCA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development