GgaEX7006238 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35915126-35920701:+
Coord C1 exon
chr7:35915126-35915342
Coord A exon
chr7:35916470-35916602
Coord C2 exon
chr7:35920488-35920701
Length
133 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTCGTCCAACGAAGGGA
3' ss Score
4.23
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GAGTTGGAAATCTGCAAAGATCATCCAGTCAGCGTAGCACACTCACATACCAAAGAAATAATTATGCTCTGAACACAACTGCTACCTATGCGGAACCCTACAGGTCAATGCAGTACCGACTGTCAGAGTCTGGCTATAACAGGCTGCAGCACACAGCGCCCGCTGATGATGGGACCACGCGATCTCCATCCATAGATAGCATCCAAAAGGACCCCAG
Seq A exon
GGAGTTTGCTTGGAGAGATCCAGAACTGCCTGAAGTCATTCACATGCTCCAACACCAGTTCCCGTCAGTCCAGGCGAACGCGGCTGCCTACCTTCAGCATTTGTGCTTCGGAGATAACAAAGTGAAAACAGAG
Seq C2 exon
GTGTGCCGGCTGGGAGGGATCAAACACCTGGTGGATCTCCTGGATCACAGAGCTCTGGAGGTTCAGAAGAATGCGTGTGGTGCACTGAGAAACCTCGTGTATGGAAAGTCTACTGATGAAAACAAAATAGCAATGAAGAACGTTGGTGGGATCCCTGCACTTCTACGACTGCTAAGAAAATCTGTTGACGCAGAAATAAAAGAGCTCGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'22-31,'22-30,23-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(9.8=5.5)
A:
PF0051418=Arm=PD(87.8=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATAACAGGCTGCAGCACA
R:
TAGAAGTGCAGGGATCCCACC
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]