RnoEX6016934 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45374952-45383274:+
Coord C1 exon
chr3:45374952-45375171
Coord A exon
chr3:45381677-45381809
Coord C2 exon
chr3:45383061-45383274
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCCGTGTCTCTTCCATGTAGGGA
3' ss Score
9.96
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
TAGGCATTGGGAATCTACAAAGGACTTCCAGCCAGAGAAGCACCCTTACATACCAAAGAAATAACTATGCTCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCTGTACAGTACCGAGTCCAAGAGTGCAGCTATAACCGGCTGCCACACACAGGGCCGGCTGACGATGGTGCCACGAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
Seq A exon
GGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCAACACCAGTTCCCGTCCGTGCAGGCGAATGCCGCGGCCTACCTGCAGCACCTGTGCTTTGGCGACAACAAAGTGAAGATGGAG
Seq C2 exon
GTGTACAGGCTAGGGGGAATCAAGCATCTGGTTGACCTATTGGACCACAGGGTGTTGGAAGTTCAGAAGAATGCTTGTGGTGCCCTGCGAAACCTTGTGTTTGGCAAGTCTACAGATGAAAATAAAATAGCAATGAAGAATGTCGGTGGCATCCCTGCCTTGCTGCGACTGTTGAGAAAGTCCATTGATGCAGAAGTAAGGGAGCTTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-'32-39,'32-37,34-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCAGCCAGAGAAGCAC
R:
ACACCCTGTGGTCCAATAGGT
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]