MmuEX6101437 @ mm9
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59149751-59160772:+
Coord C1 exon
chr2:59149751-59149970
Coord A exon
chr2:59156569-59156701
Coord C2 exon
chr2:59160559-59160772
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTCTCTTCCACGTAGGGA
3' ss Score
9.23
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
TAGGTATTGGAAATCTACAAAGGACATCCAGCCAGCGAAGCACCCTTACATACCAAAGAAATAACTATGCCCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCAGTTCAGTACCGAGTCCAAGAGTGCAGCTATAACAGGCTGCAGCACACAGGGCCAGCTGATGACGGTGCCACAAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
Seq A exon
GGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCAGCACCAGTTCCCATCGGTCCAGGCAAATGCCGCAGCCTACCTGCAGCATCTGTGCTTTGGTGACAACAAAGTGAAGATGGAG
Seq C2 exon
GTGTACAGGCTAGGGGGAATCAAGCATCTGGTCGACCTGTTGGACCACAGGGTGTTGGAAGTTCAGAAGAATGCTTGTGGCGCCCTTCGAAACCTTGTGTTTGGCAAGTCAACAGACGAAAATAAAATAGCAATGAAGAACGTTGGTGGAATCCCTGCCTTGCTGCGACTGTTAAGAAAATCCATTGATGCAGAAGTAAGGGAGCTTGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-'23-27,'23-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.496 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(9.8=5.4)
A:
PF0051418=Arm=PD(87.8=80.0),PF0051418=Arm=PU(14.6=13.3)
C2:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATAACAGGCTGCAGCACA
R:
CAAGGCAGGGATTCCACCAAC
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: