MmuEX6101667 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65107758-65126305:-
Coord C1 exon
chr2:65126208-65126305
Coord A exon
chr2:65125893-65126117
Coord C2 exon
chr2:65107758-65107917
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGATTTTCTGTTAGACT
3' ss Score
5.78
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
AGTCCTGCCAAATATCACACAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGTTTTTTCCAACGCAGCAAGAAAAAGCGAGAGCAA
Seq A exon
ACTGCCAGTGCTCCTGCGACCCCACTAGTGAGCAAGCATCGTCCATCTTTCACGAGGTCCAACACCATTTCCAAACCGTACATTTCCAATACCCTGCCCTCGGATGCACCCAAGAAGAGACGTGCCCCACTGCCACCGATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGACGAGCGTCTTGTGTGGAGAGATCCACCAGTGTGGACGACACAGATAAG
Seq C2 exon
AGTTCCTCTGAAGCGATCATGGTGAGGACAGGATCACTGCAGCTCAGCAGCACGTCGATAGGAACTTCATCTCTGAAGAGAACGAAGCGAAAAGCACCTGCCCCACCTTCGAAAACCCCCCTGGCTCAGACTGATGAAAGGAACTCTGCAATGGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'35-23,'35-20,37-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.985 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(39.2=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAATATCACACAACCCGG
R:
CATGAGCCATTGCAGAGTTCCT
Band lengths:
252-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types