GgaEX7006029 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19594854-19601389:+
Coord C1 exon
chr7:19594854-19594951
Coord A exon
chr7:19595076-19595309
Coord C2 exon
chr7:19601248-19601389
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCTTTCACCCAAATCCCAAGACT
3' ss Score
1.87
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
Seq A exon
ACTGCCAGTGCCCCAGCAACTCCATTAATGAGCAAGCCAAGGCCAATGTTTACCACAAGATCTGGCACGGGTAGCAAGCAGTATGATTCTAATACTCTGCCATCTGAAATGCCGAAAAAACGGAGAGCTCCTCTACCACCTATGCCAAATTCTCAGAGTGCCCCCCAGGAACTTGCAGAAGTCAAGACAGAATCTGATACTGTGAAATCTAACAGCCTTGATAGGAATGAACAG
Seq C2 exon
ACCCCTTTGGGATTAGTAAGAAAAGGTTCTCTACCGCTCAGTGACACAGCTTCTGTGAACTCTCTACGGAGGATGAAGCGCAAAGCACCCTCACCACCCTCTAGAACACCAGAAGATCGAAGTGAAAGCAGTAATGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'18-21,'18-15,19-21=AN
Average complexity
A_S
Mappability confidence:
92%=100=89%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(33.7=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCGTGTGTCTGAAAACTCA
R:
AGTCTCATTACTGCTTTCACTTCGA
Band lengths:
236-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]