HsaEX0016158 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164704952-164722522:-
Coord C1 exon
chr2:164722425-164722522
Coord A exon
chr2:164722075-164722311
Coord C2 exon
chr2:164704952-164705105
Length
237 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCATTCTTTACTAGACT
3' ss Score
7.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGTCCTGCCAAATATCACAAAACCTAGATATTATGAAGGAGAAAGAAAATAAAGGGTTTTTCAGTTTTTTTCAACGCAGTAAGAAAAAGCGAGACCAA
Seq A exon
ACTGCAAGTGCCCCTGCAACCCCTCTAGTAAATAAGCACCGCCCAACTTTTACAAGGTCCAATACCATTTCCAAACCATATATTTCCAACACCCTGCCGTCGGATGCACCCAAGAAGAGGCGGGCTCCACTGCCCCCGATGCCAGCATCTCAGAGTGTCCCCCAAGACCTTGCACACATCCAGGAGAGGCCTGCTTCTTGTATAGTGAAATCCATGAGCGTGGATGAGACAGATAAG
Seq C2 exon
AGTCCCTGTGAAGCAGGAAGAGTGAGGGCAGGTTCACTGCAGCTCAGCAGCATGTCTGCAGGGAATTCATCTTTGAGAAGGACAAAGCGAAAAGCACCTTCCCCACCCTCCAAAATACCCCCGCATCAAAGTGATGAAAATAGTCGTGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX1-9/10=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.138 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(39.2=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCCAAATATCACAAAACCT
R:
GTCACACGACTATTTTCATCACTT
Band lengths:
250-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development