RnoEX6017099 @ rn6
Exon Skipping
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51165166-51187918:-
Coord C1 exon
chr3:51187821-51187918
Coord A exon
chr3:51187491-51187715
Coord C2 exon
chr3:51165166-51165328
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGATTTTTCTGTTAGACT
3' ss Score
5.99
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
AGTCCTGCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTTCCAACGCAGTAAGAAAAAGCGAGAGCAA
Seq A exon
ACTGCCAGCGCTCCTGCGACCCCACTAGTGAGCAAGCACCGTCCTTCTTTTACGAGGTCCAACACCATTTCCAAACCCTACATTTCCAACACGCTGCCCTCTGATGCACCCAAGAAGAGGCGTGCCCCGCTGCCACCCATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGGCGCGCTTCTTGTGTGGAGAGATCCACCAGTGTGGACGACACGGATAAG
Seq C2 exon
AGTTCCTCTGAAGGATTCATGGTGAGGACAGGATCACTGCAACTCAGTGGCAGTACATCAGTAGGAACTTCATCTCTTAAGAGAACGAAGCGAAAAGCACCTGCCCCACCTTCGAAACCCTCCCTGACTGAGACCGATGAAGGGAGCTCTGCGGCTGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016-'20-9,'20-8,21-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(33.7=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCCAAATATCACATAACCC
R:
CATGAGCAGCCGCAGAGC
Band lengths:
261-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]