DreEX6020636 @ danRer10
Exon Skipping
Gene
ENSDARG00000089858 | COBLL1 (1 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr6:10116530-10119012:+
Coord C1 exon
chr6:10116530-10116636
Coord A exon
chr6:10116939-10117148
Coord C2 exon
chr6:10118904-10119012
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCATTCAGGCT
3' ss Score
11.53
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTGCCGATGAAGAGCAGAAAACCCCTGTTAAAGAAAAGAACCACAGAGAGAAGGCAAACAAAGGATTCTTTGGCTTATTCATAAAGAGCAAGAAAACATCTGAGCAG
Seq A exon
GCTGTGGATGACAGCGCTCCAGCATCCCCTGAGCTGAACGGTCAGTGTACGGACAGGGTGAATGGTTTTAATGACCACTTTTTACCCACAATCCCTGCTGACATGTCAAAGAAGAGACGTGCTCCTCTGCCTCCTATGGTGGCGTCTCAGAGTGTCGCCTGTGACCTTCAGATTAAAGATTTTCCAGAGTCAGATCCTGCTGGAAAACAG
Seq C2 exon
GGTCCACTCAGTCGCATCTCCTCCACTGAATCCTCCCTTAAAAGGACTAAACGGAGAGCTCCGCCTCCACCGTGTGATGGCTCCGCCTCTACAAAATCAGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089858-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(35.4=94.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGATGAAGAGCAGAAAAC
R:
GTTGTCTGATTTTGTAGAGGCGGA
Band lengths:
212-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]