BtaEX6009434 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr2:31654092-31678362:+
Coord C1 exon
chr2:31654092-31654189
Coord A exon
chr2:31654301-31654537
Coord C2 exon
chr2:31678209-31678362
Length
237 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCATTCTGTATTAGACT
3' ss Score
7.47
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AGTCCTGCCAAATATCACAAAACCTAGACCTTATGAAGGATAAAGAAAGTAAAGGGTTTTTCAGCTTATTTCAACGCAGTAAGAAAAAGCGGGAGCAA
Seq A exon
ACTGTCAGCGCCCCCGCGACTCCTCTAGTAAGCAAGCACCGGCCAACTTTTACAAAGAGCAATACCATTTCCAAACAGTATATTTCAAACACCCTGCCGTCGGATGCCCCCAAGAAGAGGCGTGCTCCACTGCCCCCAATGCCAGGGTCTCAGAGTTCCCCCCAAGACCCCGCGCACATCCAGGAGAGGCCAGCTTCTTGTATGGTGAAATCCCTGAGTGTGGATGAAACAGAGGAG
Seq C2 exon
AGTTCCTATGGAGAAGGCAGGGTGAGGACGGGTTCTCTGCAGCTCAGCAGCACATCTGCTGGGAATTCATCTTTGAAAAGGACAAAGCGAAAAGCACCTTCCCCGCCCTCGAAAACAGTCCTGCTGCAAAGCGATGAGAACAGTCATGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501-'13-17,'13-8,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.975 C2=1.000
Domain overlap (PFAM):
C1:
PF094695=Cobl=PD(39.2=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCCAAATATCACAAAACCT
R:
TGACTGTTCTCATCGCTTTGCA
Band lengths:
244-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]