MmuEX6104536 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124658646-124659884:+
Coord C1 exon
chr2:124658646-124658819
Coord A exon
chr2:124659568-124659708
Coord C2 exon
chr2:124659807-124659884
Length
141 bp
Sequences
Splice sites
3' ss Seq
AAAATGTAACCACCACATAGGTG
3' ss Score
2.83
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GTACAGGTTGACAGCCATCGAAGTGGACCGTTCAGCAGGGCCATACCAAAACTACACAGTCATCTTTGTTGGCTCTGAAGCTGGCGTGGTACTTAAAGTTTTGGCAAAGACCAGTCCTTTCTCTCTGAATGACAGTGTATTACTCGAAGAGATTGAAGCTTATAACCCAGCCAA
Seq A exon
GTGCAGCGCCGAGAGTGAGGAGGACAGAAAGGTGGTCTCATTACAGCTGGACAAGGATCACCATGCTTTATACGTGGCCTTCTCTAGCTGCGTGGTCCGCATCCCCCTCAGCCGCTGTGAGCGCTACGGATCGTGTAAAAA
Seq C2 exon
GTCTTGCATTGCATCACGTGACCCGTACTGTGGTTGGTTAAGCCAGGGAGTTTGTGAGAGAGTGACCCTAGGGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'46-56,'46-46,47-56=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.6=100)
A:
PF0140314=Sema=PD(1.4=12.5),PF0143720=PSI=PU(11.7=18.8)
C2:
PF0143720=PSI=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGACAGCCATCGAAGTG
R:
GCATCCCTAGGGTCACTCTCT
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types