BtaEX6053996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62871708-62872971:-
Coord C1 exon
chr10:62872798-62872971
Coord A exon
chr10:62871881-62872021
Coord C2 exon
chr10:62871708-62871785
Length
141 bp
Sequences
Splice sites
3' ss Seq
AAATGTCTCCCACAATATAGGTG
3' ss Score
5.21
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GTACAGACTGACGGCCATCGCCGTCGACCATTCTGCCGGACCCCACCAGAACTACACAGTCATCTTTGTTGGCTCAGAAGCTGGCGTGGTGCTTAAAGTTTTGGCGAAGACCAGCCCTTTCTCTTTGAATGACAGCGTATTACTGGAAGAGATTGAAGCATACAACCATGCAAA
Seq A exon
GTGCAGTGCTGAAAATGAGGAGGACAGAAAGGTCATCTCATTACAGTTGGATAAAGACCATCATGCTTTATATGTGGCGTTCTCTAGCTGCGTTATCCGCATCCCCCTCAGTCGCTGTGAGCGTTATGGATCATGTAAAAA
Seq C2 exon
GTCTTGTATTGCATCTCGAGACCCATACTGTGGCTGGTTAAGCCAAGGGGCCTGTGGTCGAGTGAGCCCAGCGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'19-15,'19-13,20-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.6=100)
A:
PF0140314=Sema=PD(1.4=12.5),PF0143720=PSI=PU(14.5=18.8)
C2:
PF0143720=PSI=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGACTGACGGCCATCG
R:
CTGGGCTCACTCGACCACAG
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]