MmuINT0007982 @ mm10
Intron Retention
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110180227-110180648:-
Coord C1 exon
chr11:110180529-110180648
Coord A exon
chr11:110180368-110180528
Coord C2 exon
chr11:110180227-110180367
Length
161 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCCGCTCTTCCTACGCACAGATG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GCAGGCAATCCAGGCAGTTGTTAAAGACAATGAGAAGGGCGTCCTCTTGTCTACCCATGACCTGGCTGAGGCGGAGGCTCTGTGTGACCGAGCAGCCATCATGGTGTCTGGAAGGCTGAG
Seq A exon
GTGAGCCTCTCACCCTGGCTTGATTTGGGGGATAACAGCCTGCTCCTTGCTCCCGCCTTCCTCATAGATGCCCCTTTCCGCTCTCTCTGAAATTTAAGAACAACAAAAAATTCAATGACAAGGTTTTCCTTTTTCCTCTCTCCCGCTCTTCCTACGCACAG
Seq C2 exon
ATGCATCGGTCCAATCCAACACCTGAAGAGGAAGTTTGGCCAGGATTACGTTCTGGAACTCAGAGTGAAGGATGTTTCTCAAGAGCCATTAGTTCACAGGGAGATTTTGAAGCTCTTCCCCCAGGCTGCACGCCAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749:ENSMUST00000044003:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAATCCAGGCAGTTGTT
R:
CCTGGGGGAAGAGCTTCAAAA
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types