GgaINT0127083 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7943447-7943945:-
Coord C1 exon
chr18:7943829-7943945
Coord A exon
chr18:7943588-7943828
Coord C2 exon
chr18:7943447-7943587
Length
241 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CTGTTTTCCCTCTTCTACAGGTA
3' ss Score
12.98
Exon sequences
Seq C1 exon
GAAAGCAATCCAGGCTGCTGTGAGGAGCAAGGAGCGTGCAGCTGTGCTCAGCACGCACTGCCTGGAGGAGGCGGCGATGTGTGACCGCGTGGCTGTGCTGGTGGCGGGGCAGCTGCG
Seq A exon
GTGAGCACCAGCGTAGCAACATGCAACATTGGTTTTCAGTCTTTCTTTATGTTTATTTATTAGACTGTGGTCTCGTGGTTTGTCCCACACGTGTAATGGACACCATTTTTTGAGGACACAGCCATTATAGCAGCGCAGCATAATTAATAAGTTGAATAAGAGGGTGTATATGCTGCTTCTATTCTGTGATCACTTTATTTGCTGCTAGGATGGTGTGAGTGCTGTTTTCCCTCTTCTACAG
Seq C2 exon
GTACATTGGTTCCCCTGAGGAGCTGAGAAGGAAGTCTGGTATGAGTTACCACCTGGAAGTCAAACCGAAGGACGTGGGGCAAAGCGATGCTCTCCATAGTGAAATTCTGCACCTCTTTCCTGGCGCAGCTCGGCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCAATCCAGGCTGCTGT
R:
TTTTTGCCGAGCTGCGCC
Band lengths:
256-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]