RnoINT0010463 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324223-98324701:-
Coord C1 exon
chr10:98324582-98324701
Coord A exon
chr10:98324364-98324581
Coord C2 exon
chr10:98324223-98324363
Length
218 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TTTTATAATTCCTGACCCAGATG
3' ss Score
6.08
Exon sequences
Seq C1 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
Seq A exon
GTGGGTGCCTGCTTTTATCCCACACCTGTCCACTCTCTGATGATCAGAGAAGACAAATTTGCTTTTTCAGCAAATCAGCCTTCTTGGGTAAAAGTCGGAGTTGTCACTTCCCTGCTTAACAGTGAAGAGATTGATTTGGGTGACCCAGTGGCATCTGCGCATGCTCATGGGCACCATCTGCCACATTTGTCTTGCGGTTTTTATAATTCCTGACCCAG
Seq C2 exon
ATGTATTGGATCCATCCAACATCTAAAGAGCAAATTTGGCAAAGAATATCTCCTGGAGATGAAGGTGAAGACCCCCACACAGGTGGAGCCCCTCAACATGGAGATCATGAGGCTCTTCCCCCAGGCTGCTCGGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGGCCACCTTCGCAAA
R:
GAGCAGCCTGGGGGAAGA
Band lengths:
244-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]