GgaINT0127083 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8207956-8208454:-
Coord C1 exon
chr18:8208338-8208454
Coord A exon
chr18:8208097-8208337
Coord C2 exon
chr18:8207956-8208096
Length
241 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CTGTTTTCCCTCTTCTACAGGTA
3' ss Score
12.98
Exon sequences
Seq C1 exon
GAAAGCAATCCAGGCTGCTGTGAGGAGCAAGGAGCGTGCAGCTGTGCTCAGCACGCACTGCCTGGAGGAGGCGGCGATGTGTGACCGCGTGGCTGTGCTGGTGGCGGGGCAGCTGCG
Seq A exon
GTGAGCACCAGCGTAGCAACATGCAACATTGGTTTTCAGTCTTTCTTTATGTTTATTTATTAGACTGTGGTCTCGTGGTTTGTCCCACACGTGTAATGGACACCATTTTTTGAGGACACAGCCATTATAGCAGCGCAGCATAATTAATAAGTTGAATAAGAGGGTGTATATGCTGCTTCTATTCTGTGATCACTTTATTTGCTGCTAGGATGGTGTGAGTGCTGTTTTCCCTCTTCTACAG
Seq C2 exon
GTACATTGGTTCCCCTGAGGAGCTGAGAAGGAAGTCTGGTATGAGTTACCACCTGGAAGTCAAACCGAAGGACGTGGGGCAAAGCGATGCTCTCCATAGTGAAATTCTGCACCTCTTTCCTGGCGCAGCTCGGCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCAATCCAGGCTGCTGT
R:
TTTTTGCCGAGCTGCGCC
Band lengths:
256-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]