MmuINT0008101 @ mm9
Intron Retention
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109797656-109798130:-
Coord C1 exon
chr11:109798011-109798130
Coord A exon
chr11:109797797-109798010
Coord C2 exon
chr11:109797656-109797796
Length
214 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATCCTCCTCCAATTCCCAGGTG
3' ss Score
9.69
Exon sequences
Seq C1 exon
GCAAGCAATCAGGGCCATCATAAAAAATACAGACAGGGGTGCCCTGCTGACCACCCATTACATGGCAGAGGCTGAGGCTCTGTGTGACCGAGTGGCCATCCTGGTGTCTGGAAGGCTGAG
Seq A exon
GTGAGTATGTGTCTCGAGACCACACTGACTCTTGCAATGTGTGACTAGATGGTGTTTCCCATAGACAAGGAAATAAATGTTAATGGCTAGAATTGCTAGACCCCAGTTAACAGCAAGAACCCCAAGACAGACCTGGTAACAAGCTGAGGGTTTCAAACACTGCCACACATACTTCTCTCTCCCTATTCCGAACGCATCCTCCTCCAATTCCCAG
Seq C2 exon
GTGTATTGGATCCATCCAACATCTCAAAAGCAAATTTGGCAAAGATTACCTGCTGGAGATGAAGGTGAAGACCCTCGAGCAGGTGGAGCCCCTCAATACGGAGATCCTCAGGCTTTTTCCCCAGGCTTCTAGGCAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-Abca8b:NM_013851:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCAATCAGGGCCATCAT
R:
GTTCCTGCCTAGAAGCCTGGG
Band lengths:
260-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: