RnoINT0010425 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98242539-98243017:-
Coord C1 exon
chr10:98242898-98243017
Coord A exon
chr10:98242680-98242897
Coord C2 exon
chr10:98242539-98242679
Length
218 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATCATTCTCTGATTCCCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
GCAAGCAATCAGGGCCATCATAAAAAATACAGACAGGGGCGCCCTTCTCACCACCCATTACATGGCAGAGGCTGAGGCTCTGTGTGACCGCGTGGCCATTCTGGTGTCTGGAAGGTTGAG
Seq A exon
GTGAGTATGTGTCTTGAGGCCACACTCACTCACTCTTGCAGTGTGTGACTAGACAGTTTTGCCTATAGACAAGGAAATTAATGTAATGGCTGGAATTGCTAGACTCTCAATTAACAGCAAGAACCCTAAGACAGTCCTGGTAGCAAGCGGAAAGTTTCAAACACTGTTGTACATACTTCTCTCTCCCTCTTCTGAACACATCATTCTCTGATTCCCAG
Seq C2 exon
GTGTATTGGATCAATCCAACATCTCAAAAGCAAATTCGGCAAAGATTACCTGCTGGAGATGAAGGTGAAGACTCTCGAGCAGGTGGAGCTCCTCAACACAGAGGTCCTAAGGCTTTTCCCCCAGGCTGCTAGGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCAATCAGGGCCATCAT
R:
CTAGCAGCCTGGGGGAAAAG
Band lengths:
252-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]