MmuINT0010481 @ mm9
Intron Retention
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:29698397-29700319:-
Coord C1 exon
chr7:29700232-29700319
Coord A exon
chr7:29698476-29700231
Coord C2 exon
chr7:29698397-29698475
Length
1756 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
ACCTGTGTGTTCTCTTCCAGCTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
AGACCTCTGCTAAGGAAGGACTCCTCCTCTGGTGCCAGAGAAAGACAGCCCCATATAAAAACGTCAACGTCCAGAACTTCCATATCAG
Seq A exon
GTGCTTCCTCATACTCGACTTTGCTTGCCACGTTTTCATCCTGGTCTATGATGTATAGCAAACCTCAATAAGTCCTTGAGCTGCTGTTGGTGACCGTGTGCCCATTGGAAGTTCCTTGTCTGGTCTGAGAGGAGACTGAAGTTGCTTAAAACAGCTACAGGCTTTCTACCACGTCCCAAGCCATAGTCAGGCTTCCTCTTCATTTTTACATTTCAAGAGAGGCCAGCACATAGATTGCTATTGTGTTTTAACTTAAAAGAATGTGCTTTCCAACTGCTAAGATGAGCCACAGGTCTGCTGACCCTGGGTGAGGGAGGCAAAGGATAGATGATGTTGTAAACTGAGAGAGATGCCAGGGTCTGTGCTATGTGAGGCCAGGGCAACAGGAGGCTACTGTCTGCCTGGGGGGTATTCATTCAGCACACAACTTTACTACCGTTTGTCTGGAACAGGATCCACAGGGCCCTGCTGTGTCACTACATGCTGAGTGTGTTCTGTCCTTAACAGCACAGGTCCCCCTGGGTGGCTCTGTTCCGTGTATTTCCTTTGCTGCTTCTACACATAGGGCAGGGGAAAGGCTCTGTCTAAGTCTAAACACTAGTTGGACTGTTGATTCCAAATAGTGAGGTGGTGGGAAGGAAATGAGTGACTGTTTTAAGCAGGTGATAACAGAGCTCCACCCTAGAAGGAACCGATCCTTGCAGCAACTCAGGAAAGAGACTGGCTTTGTAGAGATCATTTTGTTCCAGGGACCTTCTGGCCACCCAATATCCAGGCACTTAGCCCTTGGCCTGTACCACCATGATTGGGTCAGCCAGGATGCAAAATCCCACCTACCTTCTCTAAGGGGCCGTCTCTTGGTGCAGCCTATCCTTTTGTTTTGTTTTTTAAAGATTTACTTATTTATTTATGTGTGTGAGTACACAATAGCTGTCTTCAGACACACCAGAAGAGGGCATAAGATCATTACAGACGGTTGTGAGCTACCATGTGGTTCCTGGGAATTGAGCTCAGGACCCTTGGAAGAACAGCACTCTTAATTGCTGAGCCATCTCTCCAGCCCCCAAATCAATCAATACTTTATCCCGAAGTGTCTGGTTCAGAGGCTGTGTGCAAAGCTACTGCAGCATCATGTCCCTGCGGTGCCTAACACACACTGAGCCTGCTGGACATGGGAATTAAGCATTGTTGTGGGCCCTTGGGCTATCGGGGCTCCCAGAACAGCAAGGATCTGTGGCTGCACTCTGCTTCTTTATGGGTTCTTCTTTTTCCTCACCCTTTACCCCCACCCCACCCCCACCCCGGATTTCTTCTCCCTAACACTAGGTAGGAGAGAGACAGTGAGGGAGAGTGATCCCTGAGTCTAATTTCTTTCCTTTTGTTTCTTCTTTGACCGTGGCTGCTGAAAAACTACCACCAACCACCTAAAAGACCAACGAAAGCACCCACCTCGCCTCTTGGGGCTCCAGCATTTACATAACCTCTGAAAACTTACCAAAATTCCAAACATCATGCAATCACAGAAATTATCTGCAACTAACAAAAAAATGCTTCTGCTAGAGCACGAGGCAAATCACAGTCACTGCTGCGGACAGTCCGACGAAGCAGCCCCACATTCCCACTCTTGGGATTAAAACGAAAGCGCATTCTTAAAATATTTCTGTTTAAAAAAAACAAACAAATTCTAGAATTCTCAACAACAACAAAAAAATGTCACCGCAGGGCCCCCGTTTCTAACCTGTGTGTTCTCTTCCAG
Seq C2 exon
CTGGAAGGACGGGCTGGCCTTCAATGCACTCATCCACCGGCACAGGCCTGAGCTGATTGAGTATGACAAGCTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808-Actn4:NM_021895:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.017 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: