RnoINT0012661 @ rn6
Intron Retention
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87098549-87100046:-
Coord C1 exon
chr1:87099959-87100046
Coord A exon
chr1:87098628-87099958
Coord C2 exon
chr1:87098549-87098627
Length
1331 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ACTTTTGCCTTCCCTTACAGCTG
3' ss Score
12.54
Exon sequences
Seq C1 exon
AGACCTCTGCCAAGGAAGGACTCCTCCTCTGGTGCCAGAGAAAGACAGCCCCGTATAAAAACGTCAACGTCCAGAACTTCCATATCAG
Seq A exon
GTAGACAGGCACCCAGCAACACTGCGGTTCTGGGATCCAGGTGCTTCCTCATGCCTGGCTTTCCTTGCCGTGTTCTCATCCTGGTCTGTTCTATACAGCAAGCCTCAGTAAGTCCTTGACCTGCTCTCGGTGCCTGTGTGCCTGAGAGGAGACTGAAGCTGTTTAAACAGCCACAGCCAGGCTTCCTCTTCCTCTTCACATCTCAGGAGGCATAGACTGCCACTGCACTTGAACTTAAGAGCATGTGCTTTCCAGCTGCTAAGATGAGCACAACTCAGCCCAGCCAAGGGTCTACTGTCCCTGGGTGAGGGAGGCAAAGGCGAGATGTCTCTGTAATCTGAGAGAGGCAGGGGCCTGGGCCATGTGAGGCCAGGGCAGTAGGAGGCTATCGTCTGCCTGGGGTGTCCCCTTAGACTCATTCAACACATGACTCTGCTGTGTGATGTAAAAGGCCCCGCTGTGTCACTCCATGCTGATTGTGCTCTGTCCTTAACAGCACGTGGTTCCCCTTGGTGGCTCTGCTCAGTGTATTTCTTTTGCTGCTGCCTGCCATTGATTTCACCAGAAGAGGGCATCAGCTCCAATGACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGATTTGAACTCAGGGCCTCTAGAAGAGCAGTTAGTGCTCTTAACCTCTAAACCATCTCTCCAGCCAGCAAATCAGTTCTTTATCCCTAAGTGTTCCGAGGTTGTGTTCTAAGCTGCCACAATGTCGTGCCTGCAGTGCCTACCTCACACTGAGCCTACTGTGCATGGGAATTAGTCATTGCCGTGAGCCCCCAGGGGCCTCAGAACTGCAAGGGTCTGTAGCTCGTCTCTTCCACTTTGTGGGTTCTTTTTCCCCACCTTTTGTACCCCGATTTCTTCTCCCTAACACTAGATAGAGAAACAAGGGGTGAGGGAATTTGATCCCTGAGCCTAATTTCTTTCCTTCTGTTTCTTCTTTGACCACAGCTACTAAAAAACTACAACTGTCCACCCTAAAACACCAACGAAAACTCCCAGCTCGCCTCTTGGGGCCCTAGCATTTATATTCCCTCTGAAAACTTCCCAAACTTCCAAATGTCATGCAATCACAGAAACTATCTGCAGCTAACAAAAAATGCTTCTGCTAGGGCATGAGGCAAATCACAGACAGCTGCTGTGGACAGTCTGAATGAAGCAGCCCCATATCCCTACACTTGGGATTAAAACAAAAGCACATTCTTAAAAATAGTTGTTTTTTAAAGAAATCAAAATTCCAGAATTCTCAAAAAATTTCACTACAGGGACCCACTTCTAACTTTTGCCTTCCCTTACAG
Seq C2 exon
CTGGAAGGATGGTCTGGCCTTCAACGCGCTCATCCACCGGCACAGACCTGAGCTGATTGAGTATGACAAACTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433:ENSRNOT00000027773:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]