MmuINT0028480 @ mm9
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25782358-25789229:-
Coord C1 exon
chr2:25789111-25789229
Coord A exon
chr2:25785546-25789110
Coord C2 exon
chr2:25782358-25785545
Length
3565 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CTCTTCCTACTCCCCAGGAGCTG
3' ss Score
-10.61
Exon sequences
Seq C1 exon
GTCCTAAACTCTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAATGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAGCCTCACAAGAATTCAATATTGGAG
Seq A exon
GCAAGTGTCAAATTTTATGGTGGTTATACATAGAATAAAAATAAATTCTGTTAGCCTTTGCTGTTAATGCCAGAGGTATGTTCTCTTCTGTTATTTTAAGCTACCCTGTTACTGAATAGCCATGGAGTCTTTTTCTCCTAATTATCAAGTAGAGGGGTGTGTGTCCTGAAGCATGAACACAGAATTCTCTGTAGGGTTATGGGAGACCCCATAGAAGAACAGGATTTTGTCAGAAAGGTGGATTACTAATTCAGTTAATGGTTTCATTTGGTTCAGAGCTAGACATAGAAGATAAGAGGTATCCTCTTCAGCCGTTCATGGTAGGTATGGCGTGCTGGCCATGCGAGGGCCAGGACCTGGTCCAGTGGGCCACATTCCTGGGGGGAGAGGAGACTGTTTCTGTGGCTATAGATGTGACTTGTTTCTGTTTTTATTTTCTGGTGCTGACAGTGGAACACAGAGCCTAATGCATATATAGTAGACAAGTACCGTGCCACCCAGCAACCCACTTTGTCCCCAGAGTAGAGTAGATATTTTTAAATGGCAGTGCACTTGAGACAGAAAAGAGGCAGGTGACTCTGCTGTCCTGCTAGTGAGTGCCCATGGCTGAAGGCAGAAGTTAGAAGGGTGGGCCTTGGAGGCACTTTGGGCACCTGAGTCACCAAGAACTGAAAAGTTGGGTCAGGTGGAAAACTACTCGTCTTTCCTGTGTCAGTTGTCACTTCCTTGAGGCTGTTTGTGTCTGCTGGTTTGCTGCTTTGTGTCTGCTCATGCCTATAATGTCAGCATTTAAGAGACTGAGGCAGGAGGATTCCTATGAGATTGAAGCTAGCTTGGACTATAGTATAAGACTCTCAAAAAAAGAGAGAGAGAGAGAACAAGAAAAGATGAGAGATGTTAGTAGCCTTTCAAGTTCAAGAGTCTGGAGACAGTTAGAAAGTGAGGGTCAAAGTTAGGGTTTGACATGCTCTTCACAATTGGGAACTGTGAGTATGTGTGCTGGGAGGGAGGCCACATCCGCACAGTGAATGCTTAGAGTGTGTGTATTGGTGAGCCCTGTGCAGTGGCCTAGGGAGGACTGCAGCCAGCATAATATGCTGCATCTTCAGCAGTAGGGTCTTACCGTCTAGTGAGAGTATGCAGCCAAGGACAATGGCAGGATTCTATCTATGTTTGGGGGCCTTTGGCCTCCTTGTAAGGAACTATTCCATGCTTGACACTGAGGTCTGTTGTTTTAATAACACAGGGTTTCCTGGGAGGAACTTTGCAGGGCATCTCCACTCCTTTAAAATTCCTCTTAAAATTTTTTATATTTTAATAAAGTTAGAAATTAGTGGGTTTCCATAAGACTTTGCTATACATCCTTTATATTATTATTATTATTATTGTTGTTGTTTTGTTTTGTTTTATTTCTTTTAAAAATATTTATTTTTATTTTATATGTTATGGATATTTTGCCTGTTTGTATGTCTGGGCACCGTGTGACCAGAAGAAGGTGTTGGATCCTCTAGAACTGGAATTACAGATGGTCGTGAGCTACCATGAGGTGCCAGGAGTTGAACTCCATCCTCTGAAAGAGCAGGAAGTGCTTTTAAGTGCTGAACCTTCTCTCCAGCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTATTTTTTAACTCAACTGTATTCTTTCACATGGTACCTAGTCAGCCATGTAAAACTTAATTCCAAACTCTAAAGGGAAGGCAGAGTTAATGTGATGGTCAGCCAGCTCAGTACAAGGAGCCTTCCTGTCAGCCATTGATTTGGACACCCAGGAAGTTAAGTACCAGCTTCCTTACAGAGCCACACTCCAGGAAATGGGTGAGGGACCCTGATACACAACAGCTGCCATGCCTGCAGGTGGCGCTCTTCTTCCTGACCAGAGCTCATTCAGCCATGTTTAAACACCGTTCATATAGGTTAGGTCAGTATTGTATACAGACTTAGTTTTCTTTTTCTATTTAATTTTTTACATTTGTAGGTTGATAGTGGCTGGAGAGAGATCTCAATGGTTAAGAGCACTGGCTGCACTTCTAGAAGCTGGGGTTTGACTCTTAGGCCCACCTGGCAGGTCACCACCGTCTGTAACTCTAATACTAGGGGCACCACTGCCCTCTTCTGGCTTTCATGTGGTACACAGACAAACATGTAGGCAAAACATTCTGGGTCAGTGAGGTGGCTCAGCAAATACTGACAGCATGAGTTTGATCCTCGGAACACATGCGTAGCTGAAAGGGGAGAACCAGTTTAAAAAGTTGTCCTCTGACCTACACACGTGTACCCTTTCCATCATACACATGTACATACTACAAAGGATAGACAATAATAAGCCCATTACATTACACTGGCAAAATCAAATGTTTTGGAAATTGTCTCTTCTGAAGCAAAGATAAGCCATTGTTTTATATTTTTATAACTCTTAAATTTTCGGCTTTATGGGCGAGAACTGGGACCTCCTTTTGGTCTGGCACACCCTGCTTTTTGGGTGGCCTCAGAGTCTCTTTTGCACTCACTGGAGATGGTAGGCTGAGATTATAACACTGCAGTCTGATGCCAGGAAAGTTCAGGAGCCCCCACCATACTCAGGAACTGCTGATACCGAGAGTTTATGTGGAGGAGTGCACAATGTAGGACTGTATTCTCACACACTGCATAGCAAAGCCTGGTAGCAACGTCAATAGGTTGTTGGCTGCAGGTTCTTTCTTGGTAATAGCTTTATTAGAGTGGGATGTGGTGGCACATGCCATTGGTCCCAGCACTCAGGAAGCAGAGGCAGGGAGATCTCTGGGTTTAAGGCCCACCTGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTACACAGAGAACCCTGTCTTGGCTGGAGGGGGAGGGGTAAAATCTAGACTTTAGTTCACAAATGCTACCCTTTGAAAGCCATCACTCAGTAGGTTTCTGTGTATTTAGTTCAGTCACTGGTCTACATGCGGTCTGTCTCCTTGGATGTCCTTATTCTTGACTTTGCATATAGAAGGAAGACTCAGACATGTAAGTGGCCATGGTAGTCAGGACTTGGAGAGAGTGTGGTCACAGGATGTCATTTGGTACAGTGTGATGAGCCGCAGACAGTTTTCGCAGTTTCCTTGAGAACAGACTCCACGTCCACTGTGGAGAGCAGCTGACTACATCATTTCATATCTGCCCTCATAGTCTTCTTTATTTTAGCATTCATTGTGAACTGGTGCTCACTTGGTTTTGATTTACGTTTCTCCACAGCATGGAGCTGTGAAGCATCTTTTTATATGATTCCTCAGTTTGTCTCAGCAGCATTTTTCCTTGCTTGCTCAGAGTCTTTAGTAAAATCTCATTGGCCAGCCATAGCTTTTTTGAGTGGGGAGGCTGTGCTGAACCTGTTTTGTCTGTCTTAAAAGAGGATGTTTATTGGACCCTTACTGCCTTGGAACAATACCTACCCATTGGACAACAATGGGAATCTAGGGTGTAAGAGTGACATTCAGTGTTTTCCATCTCTTCCTACTCCCCAGGAG
Seq C2 exon
CTGGAGAAGTGTGATGCCAACCACTATATTATTCTGTTCCGAGATGCGGGCTGCCAGTTCAGGGCACTTTACTGCTACCAACCCGACACTGAAGAAATCTACAAACTCACTGGCACGGGGCCAAAAAGCATCACCAAGAAGATGATTGACAAACTATATAAATACAGCTCAGACCGAAAGCAGTTTAACCTGATCCCAGCCAAGACCATGTCAGTCAGCGTGGATGCACTCACGATCCATAACCACTTGTGGCAGCCCAAGCGGCCCACGGTGCCAAAGAAGACCCAGACTCGTAAGTGACCATGGCAACCAGGACTCTGAGAGGTTGTGCTGACGGGATCCCTATTTATTATTTTCATCTACTTGGTACGAAGTTGATGAGCCATGGACAGTTTTCTACAGCGGTTCCTAGAGAACAGAGAAGATGCTCTCTCCCCTGCACACATGGATGCTGGGCATGACATATGCAGGAGTGAGTCCTGTGCTTTCATGGGCATGGCTGCTGTGGCCCTGCTGACCACTGAGATCCTCAGAATAAGGGACACCATGGAGTGAGATCCTGGCCTGTGGGCCCCTCACTTGAAGTTCTTCAGAATAAGTTAAATGTGATCTGCTCTCTGGCCTCCCTTCACCCCTGTGCACATTGCCTGATGCCCCATGTTGGCCAGCTGTAATCGTGCGTGATTATAGGGCCAAGGCTCATTCGGGTCAGGGTGTTTGAATGTCTTCATAAAAGGAGTTCGTATGGGAAATCTTTTTCATTTTAGAAATTGTATAATATTTATTGACTGTGTCTACTGCCAACCTTTATATCCAGTTCTAAGATTCTGAAAAAAAGAAAAGAAAAAAAAAAACCTGTTCCTTGCTGCTCAGAAAAAGTTTACTGAAAATGTCAGTTCACTAAAAGCACTGAAATCGGTAAAGTTTGTCTTCTGCTAAAATGACGTTTACATATGTGGAGTGAGTATTTCTGCCACACAGTTGGGGGCTGTGGGTACTGCTAGCTGATGCTGGCCTCATTGGAAGCCGGCAGCTAAGCCGGCTTAGCCACCACTGGTTAGGTCTGGGGAATGTGCTGGCATGTTCACTCTGATAAAGGCAGATTTTGGTATAGTAGCGTACTTTCCACCCTTGGCTGCCGGTTCCTTTGTGGTGCTGTGAAGGCCTGGCTTACCTACCACGGTTCTTGCTTCTGGAGGAACAGCGTGCTCAGTGCAGTGTGCAGTCTCAGGTGAGGTGGGTAATTCTGCTTTTTGCCTCTTTTAAAACTTGGTGGTTATTTGCGGTTATTTCAGAATGGTGTAGCTGCTTTGGGTCTCTTCCCCGCTGGCCCCTGTGGCAGCTGCCTGCCTCAGAACAGGCGTTCCTGGGGAGCAGAGGTGCCCCAGCGATGGATCAGCTATGTGAAGACCCTGGAGCCACTTGTAGTTTTGCACATTTCTTTTTGAGAGTGTTACTTGAATCTGTCTTAACTGCAGGAGAGACTTGAAGATCATAGAGGGAACTCAGACATCTTAGTGTTAGCGCTAGCAGTGTCATGTAGACAGAGGAAAGGAGCATGGGACAGAACGCCGGAGGCGTGAGGCGAGGTCTTGTCTTCTCTTCCTTGGTGACTGTGTATCCAGTCAGGGGTGGCGCTGTGCTGTATGAGCATTAAAGTCTGTGGCCACCTGTCACTGGATGCCCTGTGTGTCTTCATTTCTCACTGTGCACTTGATGTTACCATATTTATTTTAAGAGAGCACTAAAATATAATAAAGTAATGAGCTGGCTTTCTGTTAACCATGTGTGTGGTTGTCACAACTCCTTCTGCTGACAGTGTCCCACATCTTCTGGCTTCAGGGCAGCTGCGCATGACTTTTGGGTTACCTAGGAATTTATTTTTCATGAAGAGTTGGAAGACCTGGTGTAGAGCAGGAAGTTGCATTTCTGCTCGACTTTTAATACGGTGACTTGGCATGTGGCCTGTCCTGAAGGCTGTCTCAGAACGCAGGGTCTGCATGTGAAGTACAGTGCCAGTGTCTCAAGGCCGGGCTGTGGAGGCCATGTGGCTTGATGGCTCAGAAGCACTCGTGCCTTCTGTGTTCCATGACACAGAAGTAGTTTTGATTTTTTTTTTAATTAGGAAGTTTCCGGTACAGGATTTTGTGGTGGTGATCTGGAGCCTCCAGGGTGTGGGTACACTGTCTTGACCAACTGTGCTGGGAAGGCTACTCAGCTTTTCGGGCAGAAAGTGCCAAGAAATTGAATACATGACGACTCATGCAGCTCATTCCTTAGTAACAACAGACCCCCCCGAGGAGCCCAGGTCGGTTGGCATTAAAAATATTTCTCAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCAAGCACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTTGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAATAAAAAAAAAAAATCTCAGAACTAGATGTGCAGGTCTACATGTCTGTGTCGATGTGGGATGTACCTGTGTGTGCGTATATGAGTATGTGCACACAAACATGTGCATATGGCCTGTGTACACGTGTGTATGCATGCCAAAGATAGCGTTTCCAGTGTGACCTTTTGACCTGGTATTCTCGGTGTGTTCCTGCAATACAATCTCCAATCAGACTTTTAAGGCCCAGACTGCTTCAGGCAACATTGAAAAGTGGCATAATACAAAATTTACTTCTAGATTGTTTGAAACTATGGTTGTTACTTGGAAGAAGAAAGTGTTAAAAGTCCATTTTTCTTGTTGAAAGTTAATCAACTTGAGTAAACCTTTATAGATTGGTGCTGGTTTACCTAGTGAAATGGCTTTGATCTTGGTTACCTGAGCCTATTGGTGATTTCATTCTATCTGTGTCCAGTACCACATGTGTAAAGCCAGTTCTAACTCCTGTTTTGTGACTATGGCCAAGTCACAAGCCCCAACTGGGAACGAGCCATGCCCAGCATCCTCTTGTTTCTCACTGATTCCTTGGCAATAAACTTGTACCTTGCTGACTCAGGGTCTTCCTGGTGTCTGAGGTGCACTCTGGAGGTGCTTTTGGTATCTGGTATCACTGGTGTTCTGAGCTTTGTGTTGCTGTGATAAATGAAAACCATAATAAAAGCCACGACCAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-Camsap1:NM_001115076:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.2=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(68.2=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: