HsaINT0027165 @ hg19
Intron Retention
Gene
ENSG00000130559 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:19946]
Coordinates
chr9:138700333-138707061:-
Coord C1 exon
chr9:138706943-138707061
Coord A exon
chr9:138703458-138706942
Coord C2 exon
chr9:138700333-138703457
Length
3485 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTTTTCTCTCTCTGCACAGGAG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GTCCCAAGCTCTTTAAGGAGCCCAGTAGTAAATCAAACAAGCCGATTATTCACAATGCCATATCCCATTGCTGCCTGGCTGGAAAAGTGAACGAACCCCACAAGAATTCCATATTGGAG
Seq A exon
GCAAGTATCATGTTTCAACCTCAGTTTTTATGTGGAATAAAAAGTGTTTATAAATTAAGGGTTCTTTTTAAAAGAAAACACCCCTAATCTTTGATGCATGAGAGTTACTAGGGAGAATGCAGATTTCAAGGAAGAGGCCGTTCCAGGCAGGTGGGAGTGAGGAGTGCCAAGGTCCAGGGGCTGCAGTGAGCCTGTGCTGGAGGAACACCCAGGAGGACGGGGCAGGGTTCAGAGGCTACATCCTCATGTGGTGCCTCTGGGCTGAGGAAAGACATAGTTCTACTCAGTGAGATAGTGGATGCAGGTGTGGGCAGAGGAGAGCCAGGAACCCACCTGCCCTTCCCAGTAGATCAGAGCAGTCAGCAGGGAAGCCAGGGAGGCAGCCTGGAGGTGAATGAGGAACAGGGGCCAGGGCTGGAGCGGTGGGTTGGGGAGGACCGAGGACGGAGGACGGAGTGGTGGGTTGGGGAAGATGGAGTGGGGAGGGAGGGAAGAGGCGCGCACCCGCTGAGCGTGTGGACTCCGGAGCACCCAGTGTGCATGCCCAGGGAGGGGCTTGGAAGCAGGAATCTGAGGGTCCTGCACGGGGTCTAGGCTGGCCCCTGAGGGGCAGGACTGGGATTCCAGGGGAGAGGAGGCAGAGCCACTGGACCCTGCCCCAGATTGAGGCTGGTGTGTGGCCTTAAGTTGCTGGCCTTGGGATACAACGGCTTGTGAATGAGTGAATGAAAATTATGCAACAATCTGTCATCCACCAGAAATTCTGCTTTTTAATAATTAAGACTAACCCCTGGTCCTTAGTTGGTTTAGTTGTAAAAATTAAAGTGACATACGGAATTTCTGACCCACTTTAAAACGGATGTGTTCTTTTCTTGATAGTGAAGATCATCTAGACTAAGAATGGCCCCGACCTAGGCAGGTCTCGTGGCACTGGGGACAGAAGAGGCCATGGTCATGCCCTTCCTGCTTAGATTTCCACACGGAGAGGTGGTTGGCCCCCTGTATCAGTGGCCCCCAGGATCACCCTGCATGCGGAGATGCACTGGAAGGACTCGTGGCCCTCAGTGTGGAGTCGACCCAGGGCTTAGATTTATTCCAGCACTGTGGAGGGAGCCACAGCCACTGGGTGAAGAGGGAGAAGACAGAGGCGGGGCTAGGCCTTGTGCAGCTCCCTCTGCTCTCGTTCTTCCAGCAGTGGATCCACAGCAGCCTGTGGGCCATGGAAAGCCCTTTTGAGACTGGATGCCCTGAGCTCTCCTTGGGGGCTGGTCACAAGGCACACTCCCTGCCCAGTGTGCAGCAGTGTGCCTGACGCCTGGGAGGAAACCAGCGTCAGCGTGCAGACCAGCAGTTCAGGCTCAGGAGGCCCTCCTGTCTTGCCAGTGAGTGACTGGGAGCGAGCTCTGCAGATAGCAAGTTCCCAGGTGCCCACCAAGGGCCGCCCAGCAGGCAGGCCTTTCTAGGACAGCAGCCCTCTCAGCTGTGCCACATAAGCTGTGGGCACCACACGCTTCCTTATCGTGCAGGCAGCAATAAGTAAATAAGATGAACCCCACTCCCCACAGTCCCGCTGTCGCTACAAATTAAATGTTTCTTTCTTTTTGGCATCTAATTCTGTTCATATTTAAACACAGTGAGTAGGGTTGAAATCAGTATTATATAGACAGTTTTGGATTCTTTTAAAAAATACGTATTATTTAAAATAATAAACCCCATTATATGCTGATACATTGCATATTTATGAAAAGTAACTTTTCTAAAGCCAAATAAATAGAAGAGTGGCATTGACATAAGAGGGCTGGCATCTCAGCCGCTCGGGCCCTCCGTCCATTACAACCACACAGCCCAGGGCCTTGGGAAGGTTCTGCCGCACACTTGGGAGAGGCGATGAGGCCTTAGCCTTTCGAGGTCGAGGGCTTGACCCTGAGATTCCTGGGAAGGCCTCAGGATGCCTGGGCCGCATGTGGAGAACTGTGAGGGCAGACCCAGGTGCACTCCCATTCCCAGGCGTGTGGAGGGTTTGTTTTTAAAAGTTACCAAAACACTTGAAGATACGTTTTAAACTTTAAAATACAATCAACAAACGCGGCGACAGGCATCAGCAGTTTGTCATACTTCAGATTCTTCTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGACTGGAGTACAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCCCTCCAGACTCAAGCGATTCTCTGAGTAGCTCGGACTACAGGCATGTGCCACCACGCCTGGCTAATTTTTGTATCCTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATTCGCCCACCTCAGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACAGCGCCCGGCCCAAACAGCTTTATGAGATATCATTCACATACCGTAAAATTCACCCTTTTAAGTTATACCATTCAGTGGTTTTTAGTACATTAATAGAGTAGCACAACCATCACCACCGCCTAATTTCAGAGCATTTTCATCCTCATAAAAAGAAACTCCACGCCCGTGAACAGTCACCCCCCTAAGTCTTCCCGCGCCCAAGCTCTTGGCGGTCGCCAGTCTGTCTCCATGGATTTGCCTGTTCTGGGCATTTACATAACTGGCATCATAATTATATGGCCTTTTGGGTCAGGCTTCTTTCACTTAGCGTGATGCTCTGAGGTTTCTCAGTGTAGTGTGTACCGGACCTCCATTCCTTTTTGTAGCTGGGTAATGCTCCATTGCATGCTCCGACCCCATGCTGTTCATCTCGTCATCTGCTGATGCACACTTGGGTTGATTCTTCTTCAAACATTTTTTATTGATAGGGAACAGATGTGCATGCTTTTGGGGGTACATGTGATATTTTCGTTTCTACTTTTTGCCTGTGAAGGGATAGTGCTGTTATTTATATGCAGTGTTTTGTATGGATGCGTGTTTTCATTTCCCTTGAGTACATATGTGAGAGAGGAATTGCTGGGTCCCACGGTAACTGCCTGATGGTTTGGAGAAGAGCCAAGTTGTTTTTCACAGCAGCTGCTGTGCTCTGTATCCTTCTGGCAGTGAAAGAGCCCCATGGCTCGCCAGCACTCGTTACCGCCCTGCTTCTGGGTTCCAGCCGTCCTTGTGGGCATGACGCGACGTCTCTTTCTGACTGGCATTTCTCTGGTGGCTGATGATGAGCATCTTTTCATATGCTTTTCCATTTAATCGTAAAAGCATTCTTTTCCCCCTTGCTTGCTTAGACTTCTTAAGTAAAGTCTCAATGGCATATAATGCTCCCGTACAGGGGTCTGCTGTAATTGTTTACAACAGGCAGGCCGTAGCTGACGGGTGGGAGAGCTTCCCACGGAGCGGTGCTGGTTGAGCCGCTGTGGGAGCCCAACTCGTGGCAATTGGAGTGGCCCTGAAGTGTTTGTCTCTTCCCCTTTTCTCTCTCTGCACAG
Seq C2 exon
GAGCTGGAGAAGTGTGATGCCAATCACTACATCATACTGTTTCGTGATGCTGGCTGCCAGTTCAGGGCGCTTTACTGCTACTATCCTGATACTGAGGAAATCTACAAACTCACTGGCACGGGGCCAAAGAACATCACCAAGAAAATGATCGACAAACTGTATAAATACAGCTCAGACCGAAAACAGTTTAACTTGATCCCAGCCAAAACCATGTCTGTCAGTGTGGACGCACTCACAATCCACAACCACCTGTGGCAGCCCAAGCGGCCTGCAGTGCCAAAGAAGGCCCAGACTCGTAAATGACCCCGGTGCAGCTGGCGTCCAAAGGGTGACCCAGACTCGTAAATGATGCCCTTGTGGCTGGCATCCAGAGGGTGCCACGGGGTCCTTATTTATTGTTTTCATCTATTTGGGTACGAAGTGTGCAAAGTCACAGACCTTTTGCAAAGAGGTTTCTAGACAGCAGAAGAAAACCCCTCTCTCAGCGCTCATCTCACGCAGAGGATGCCAGGCAGGGTGAGGATGGGGGAGTAGATGCCGCTTTTGCAGTGGCTCGCACTGCTGTGGCCACTGCTGACCACTGAGGCTCCCAGCGGAGGGTGTTCACAGCCAGGTCCCGGGCCACGGAGCTCCCTTACTTGAAGTTCTCCTTCAGCATAGATTAGACGTGATCCACTTTGCTTTCTTGCTTCTCACCTCGCCCCCTTGCACATTGCCTGACACCCTCATATTGGCCAGCTGTAATCTCGTGACTATGGGACTGAGGCTCAATCTTGGCTTGGGGTGTTTGAATGTCTATAGCAAAGGAATTCATAATGGGAAATCTTTTTCATTTGAGAAATTGTATGATATTTATTGGTTGTGTCTACTGCCAACATTTATATCCAATTCTAAGATTTCTGAAAAAAAATTCTTATCCCTTGCTGCTCAGAAAAAGTTTACGGAAAACACCAGTTCACTAAAAGCACCGAAATCTGCAAAGCCTGTCTTCCGCTAGAACAACGTCTACAAATGTGAAGATGATGACTTCTGGCACGCGGTCATGAGGGTGGGGAATGGCACTAGGAGCTGATGTTTGCCTCATTTAAAGTAGGCAAGCCGAGCCAACTGCAGCCATCATTCATTAAGTTTTGGGTAGTGCTCTAATGGTTTGTTCACTTTAATAAAGACAGATTTTGGTAAAGTAGAATATTTTTCATTCTGAGCATGTTTGTCCCAAAAGGTGATGCACTTAAGCTGACAGTCCCTTCAGTGGTTTTGTTAGGTCACGGCTTGTCCTGTCTGGATTCTGCATCTGGAAGCGCTGCATGCTCTCAGAGGAGCGTGCCGTTTCCCCTGTAGATGGATACTTTTGTTTTGTTGCCTATTTAAAAACAATTAAGTGGTTATTTGCAGTTATTTCAGAACTCCAAGTAAGTGGATGGCTTTGGGTTCTTTCTGCCTTGGTCCCAATGGTGTTGATGCTTCTGTGGAGCGCGGACATTCCCAGGAGCAGGTGCGTGCCAGCCATGGCTGCCAGACACTGCTGCAACTGACCAGCTGCCGGAAGATTCTGGAGCCACTAACATTAGTTTTGCACATATTTTCTTGGGAGTGTTACTTGAATCTATCTCAAACTGCAGAAAAAATCAAAAGATCAATAATTGGGAGAAAAAGAGACAAATTTAACTGTTACATAATTTTAGATAGACAAAAAACATGAGTGAGTCGTGTACATAAGGAGGGAACATGGTACAGAAGGCTAGAAGGAATTATAGGTCTTATTCCCCTTTCCTCAGTCCTTTGAAGAGAAGTACAGTCTCTTGCGATTTTGTATATATCGTGTTCGACACAGCCGCTCTCTGTCCTGTAAATAGGGAACTAAAGGCTGTATGATTTCTCAAGTGCTGAGTTACACAGTCCTGAGTGAGCTTTCTGTTACCATACTTTCACACGTGGGCTTTATTTCTCACTGTATGTTTGATATGATATTACTGTATTTATTTTAAGAAAGCACTAAGATGTAATAAAGTGATGAACTAATTTGCTTTACATTGAATCGTATGTGTGAGGTTGCTGTGGCTCATTTCGCTGACCAGGCGACACCAACTCCTTGCTTTATAGGAGTTTCACATTGTTCTTTACCATGGCCCTATCGAAGTCAGTGGAATTGGATTCTTTTTAATGAAGAGCTAGAAAATATCTGGCATAGAGCTGGAAAATTGCATTCCCATGGGACGTCTGAATCAATTCTGGATTTTCTCCATGGAATGAGTCAGTGTGTGGAACATCCTGAAACTTGTCCTTAAGCGTGTAGTTTTCACTGTTCGTTGCGAGTAAGCACTAATGTGGCATGGACATTCCTGATGTCCCAAGTCCCCAGGCCAGTGTTCGCCTAATGATTGACAGAAGCGTCCCTGCGTTCTTCATGCTTGGACACAGCAACCCTTTTAATTAGTCTTGAAAAGTTTCAGACACAGGATTAATTTTCGTGGTGGTGCTTTTGGGCCTTTCTGGCTTGGGTGGTGGTAAAGTCATGATTTTGCAGTTGATAACACTGACTTATAACTCTGTTTATCAATGTCTCCTATATTCAAAGCCCCTGCAGTGGTATTTGTGTCTCGTTGCAAATTTCTTTCAGCGGAAAGCTTGCACAACTTTCGTTGTGTCTCAGAATTCTAACCTTGTTATTTAAGACAAGCTGCTCTACCCATTTAGGATATAACTTTGTAAAGAAAGTGTAAACCAAATGATTCAATGTATGATGAAGTTTATGTGTAAATCCTTGGTAATGCTAGAATTCTGGGAGCCCAGAAGGGTTGAAAGAGAAATGAAACTTGCGTGAGTCCCATTATTTTACGCATGTATGTGCAGATACGTTCTACCCACACGTGTGCGTGCACATGGCTGTGTGCGTGCACCAAAGATGGACTGCTTTCCATGTGTCCTTTTGACTTTCTGCACGTGTCACTGCGGTGCAGTCTCTTAGCAGACTTCAGGCCCAAACTGTATTCTTCACTCAGGCAAAATTGAAAAGTGGAATAATTCTAAATTACTTCTAGGTTATACTTTTACCTCCCTGAAATTGTAGTTGTCACTTGGAGGGCAAAATATTTATTGAAATAAAATTTTCTGTTAAAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130559-CAMSAP1:NM_015447:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(67.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)