RnoINT0028766 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3373971-3380912:-
Coord C1 exon
chr3:3380794-3380912
Coord A exon
chr3:3375749-3380793
Coord C2 exon
chr3:3373971-3375748
Length
5045 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCCCATCTTTTCTTCCCCAGGAG
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTCCTAAACTGTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAACGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAACCTCACAAGAATTCAATATTGGAG
Seq A exon
GCAAGTGTCAAATTCTGTGGTGGTTCTACAAAGAATAAGAACAAATTCTGTTGGCCTTTGCTGTTGTGCAGATGCATTGTCCTCTTCCTGCTACCGACGTCTGTGGAGTCTCTTTCTCCTAATTACCAAGTAGAGGGGTGAGGCATGGATACAGAGTTCTTGCAGGGTTGTGGGGGACCCCTAGAGAAAAACAGGATTTTGACAGAAAGGTGGATTATTAAATCAATTCATGGTTTCATTTGAGACAAAGCTGGACATAAGTCTTTTCAGCCGGGGAAGAAGATGCTTCTGTTCATGGTAGGTATGGCGGTTGGCCATGGGAGGGCCAGTACTCTGGTCCAGTGGGCCACATTGCTGTTCAGAGACTGCATATGGATGTGATTTGTTTGCGGGGGGGGGGGGGTTTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGCTGATGTAGAGTCCAGAGTCTCATACATGCATAAAAGTCACCCACCCTGCCACCCAGCAACCCTCTCTGTCCCCAGAGTGGGTTAGATACTGTTAAATGGCAGTGCACCTGAGATAGAAAGGAGGCAGGTGACCCTGATGTCCTGCTAGTGAGTGTCCATGGCTGGAGGCAGGAGTTAGAGAGAAGAGGGCCTTGGAGACACTTTGGGTGCCTAAGTAACCAAGAACCTAAAAGTCGGGTCAGGTGGAAAACTGCTCATCTTTTCTGTGTCCATTGTTACTTACTTGAGGCTGTCTGTGTCTGCTGGGTATGGTACCTCAAGCCTATAACCTCAGCATTCAAGAGAAGATTCCCTGTGAGTTTGAGGCTAGCTTAGACTGTAGTATGAGACTATCAGAGGAGAGAGAGAAAGAGCGAGAGAGACAGACAGACAAGAGACACACACAGACACAGAATGAGACAGAAGAAAAGGTGTTAGTAGCCTTTCCGAGTTCAAGAACCCAGAAGGCAGTTAGAAAGTGAGGGCCATGCATACAGAAAATGTGGTTCATCTACACAGTGGAATATTACTTAGCGATCAAAAACAATGACTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCCTGAGTGAGGTAACCCAATCACAGAAAAACACACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCCTAGAACAAATGAAACTCAAGATGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGGATAGAGAGGCAAAGATTAAAACAGAGACAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGGCAGACAGGAGCCGGATGTAGATCTCTCCCGAGAGACACAGCCAGAATACAGCAAATACAGAGGTGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGACCCCATTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCAAAAGTACAACAATGCCAACCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGACTGTTGGGGGGAGGGCGGCAATGGGGGGAGGATGGGGAGGGGAACATCCATAAAGAAGGGGAGGGGGAGGGGCTAGGGGGATGTTGGCCCGGAAACCGGGAAAGGGAATAACACTAGAAATGTAAATAAGAAATACTCAAGTTAATAAAAAAAAAAAGAAAGAAAGAAAAAAAAAAAAAGAAAGTGAGGGTCAAAGTTAGGGTTTGACGTGTTCTTCACAGTTGGGAACTTTCAGTATGAGTGCGAGGAAGGAGGGCCACATCTGCACAGTGGATTCTTAGTGTGGGTATTGGGGACAGTGTGCAGTGGCCCAGGGAGGACTGCAACCAGAATAATGTGCTGTGTCTTCAGCAGTAGGCTGCTTACCAGGCAGCCAAGGACAATGGCAATACTCCTTGTTTGGGGCCTTTGGCCTCCTTGACTTGTGAGGAAGTATTCCATGCCTGACACTGAAGGTTTTGTTTAATAATACATGGTTTTGGGGGGAACATTGTCCACTCATGCATGGCATCTCCACTTCTTTAAAACTCCTTTAAAAAAATTTTTTTATTTATTATATGTAAGTACACCGTAGCTGTTTTCAGACACCAGAAGAGGGCATCGAATTCCATTACAGATGGTTGTGAGCCACTGTGTGGTTGCTGGGATTCGAACTCAGGACCTCTGGGAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCCCCCAGGCCCTTAAAATTTGTTTGTATTTTAATAAAATCAGAAATTAGTGGGTTTCCCTAAGACTTTGCTATATATCATCGTCGTCATCGTCGTCGTCGTCTTCATTGTCATCATCATCATTAAAGGCTGGAGAAATGGGTCAGTAGTTAAGAGCACTTTCTGCTCTTGCGGAGACCCCCATGTTCAGTTCCCCAAGTACAGCCACCTATAACTCTGATTCTGGGAGATCCAATACTCTTGGCTTCCTTGGGTCCCAGACACACATGTGGTACACACATATACATGCAAGCAAAGCATTTACTACTTACACAAATTTAAAAGAAAGTTTTAAAAATTAAAACAATATGTGGCTTTAATTGTGTAGCCTTATATCTGACTCTTCTCTGATGGTCTGCAAGTTATCTTGGTGCCATACCATTCCAAGTATATGGCTTTGCAGTGTGTTTTGGAGTCAGGTGTAGGTGCTTTCTTTTCTTTTTTGCACAGGATCGCTTTTGCTATCTAGGATCTTTGGTACTTCCATATAAGTTTTAGGGTTAGTTTTTCCTATTTCTGTGGAGATTGTTGCTGGATTTTGATGGGGATTGCATTGAATCTTGAATCTGTGGCTTGCTCTTGATAGGAAGACCACTTTCACAATATGAATCCCCCCCAGTCCATGAAAACAAAAACAAGCAATAAAACAACACCAGATTTATCAGTCCTGGTACGTAAGAAATACGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACACACTCACACACACACACACACTCACAAATGGGGGCTGGAGAGAAGGTTCAGCAGTTAAAAGCACTTCCTGCTCTTCCAGAGGATGGGAGTTCAACTCCTGGCACCAACATTGTGACATTGTAGCTCACGACCATCTGTAACTCCCAGTAACCCTCTGCCAGTCCTGCAGGGCCACTCTTCTCTCCAACCAGGCTCAGTCAGTTCATGCTCACCACTGCATAGAGTTAGGTCAGTGTCGTGTGTACAGACTCGGATTTTTCCTTTTCCACTTAGTCTTTTAAACATTTGTAATCTGATGGAGGGTATCTCAATGGTTAAGAGCACTGGCTGCCCTTCTAGAAGCCAGGGTTTGACTCCTAGACCCACATGGCAGCTCACAACCGTCTGTGACTCTTAATATTACAGGCTCCAGTGCCCTCTTCTGGCTTCCGTGATACCAACCAGCACACATGTGGTACATGGTCATACATGTAGGCAAAACATTCTGGGCCCGTGAGATGGCTCAGTGGGTTAAAAAAGTGTTTGCCATTCAGGCCTGACAACATGAGTTTGATTCCCTAGAACACATGCATAGGCGAAAGAAGAGAACCAGTTTCAAATAGTTGTCCTCTACACACATGTACCCTTTCCATCATGTACATGCACTGCTGCTACGAAGACGAAAATAAACAGTAGTGAGCGGATTACACTGGCAAAATCCTAAGTATTTATGAGAATCGTCTCTTCTGAAGCAAAGATAGGTCACTGTTTTATGTTTTTACAAATCTTCTAAATGTTCAGCTTTGGGGTGAGAATTGGAACCTCCTTTCGATCTGCCTCAGAATCTCCCTTGCCCTCACTGGCGATGTCAGACTGAAATTATAACACTGCAGTCAGATGCCTGGAAAAGTCAGGAGTCCTCGCCAGCGTCAGAACTGCTGATACAGGAAGTTTATCTGGAGGAAAGCACACGTTTGCAGGCGTTAGACTGTGCTCTCACACACTGCAGCAAAGCCTGGTAGCCATGTCAACAGTTTGTTGTCTGCAGCTTCTTTCTCGGTACCAGCTTTATTAGGATGGGGCGTAGTGCACTCAGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAACGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGCGCTACACAGATAAACTCTGTCTCGAAGGGGAAGAAATTTAGGCTCTAGACCACAAAGTCCACCCTTTGAAAGCTACCACTCAGTGGGTTTGAGTGTTGAGTAGACTAGTGCGGTCACTGCTCTACATGCTGTTTGTCTCCTTGGCTGTCCTTATTCTGGACATGTGAGTGACCACGGCGGGCAGGGCTCAGAGATGGTGGTCGCAGAATCTCTATTATGTCTGTCCGTCTGGTACGAAGTGCGACGAGCCATGGACAGTTTTCTACAGAGGTTCTTAGAGAACAGGAGACCCTCTCACTGCACAGACCGTGTCCACTGTGTAGAACAGCTGGCTCCTTCCGTTCTGACCCCACCATCTCATACCTGCCTCTCGTAGTCTAGTTTATGTCAGCCCTCATTGTGAAATGGTGCTCACTTGCTCTTGATTTACGCCTCTCCATACCATAAAGCTGTGAAGCATCTTTCTATATCATTCCTTGGTTTGTCTTAGTAGCACTTTTCCTTGCTTGCTCAGAGTCTTTAGTAAAATATCATTGGCCAACCATAACTTTTTTAAGTGGGGAGGCTGTGCTGGACCTGTTTTATCTGTCCTTAAAAGAGGATGCTTATTGGACACTTACTGCCTTGAATTACTGCCTACTTACTGGGCAGCAGTGGGTACCTGGGGTGTGAGTGCCGCTCAGTGTTCCCCATCTTTTCTTCCCCAG
Seq C2 exon
GAGCTGGAGAAGTGTGACGCCAACCACTATATCATCCTGTTCCGAGACGCCGGCTGCCAGTTCAGGGCTCTTTACTGCTACCAGCCCGACACTGAAGAGATCTACAAACTCACTGGCACGGGGCCCAAGAGCATCACCAAGAAGATGATTGACAAACTGTATAAATACAGCTCAGACCGGAAGCAGTTTAACCTGATCCCAGCCAAGACCATGTCTGTCAGCGTGGATGCACTCACGATCCATAACCACTTGTGGCAGCCCAAGCGGCCCACAGTGCCAAAGAAGACCCAGACTCGTAAGTGACCACGGCAGGCAGGACCCTGAGCGGATGTGCTGACGGGATCCCTATTTATTATTTTCATGCATTTGGTACGAAGCGTGGCGGGCCTCGGACAGTTCCCTACAGAGGTTCTTAGAGAACAGGAGATCCTCTCCCCCTGCACACACGGACGGATGCGTCTACAGGACTGACCTGTGCTCTCATGGGCATGGCTGCTGTGACCCTGCTGACCACTGAGGTCCTCACAATAAGGGACACCATGGAGTGAGTGAGATCCTGGGCTGTGGCCCCCTCACTTGAAGTCCGTCAGGATAAGTTAAATGTGATCTGCGCTCTGGCCTCCCTTCACCCCGTGCACATTGCCCGACGCCCCCTGCTGGCAGCTGTAATCATGCGCGGTTATAGGGCCGAGGCTCGTTCGGGTCAGGGTGTGTGAATGTCTTCATAAAAGGAGTTCGTATGGGAAATGTTTTTCACTTTAGAAATTGTATGATATTTATTGACTGTGTCTACTGCCAACCTTTATATCCAGTTCTAAGATTTCTGAAAAAAACAAAACAAAACAAAAAAAACCTGTTCCTTGCTGCTCAGAAAAAGTTTACTGAAAAATGTCAGTTCACTAAAAGCACTGAAATCAGCAAAGTTTGTCTTCTGCTAAAATGACGTTTACATATTTGGAGTGAGTATTTCTGCCACACAGTCGGGAGGGTTGTGGGGTGCTGCTAGCTGATGCTGACTTCATTGGGAGCAGACAGCTAAGCCGACGTTAGCCACCACCGGTTAGGTCTGAGGTATGTGCTGGTGTATTCACTTTCATAAAGGCAGACTTTGGTATAGTAGCGACTTTCCACCCTTGGCTGCCAGTTCCTTCGTGGTGTTATGGTGGCCTGGCTGGCTACCATAGCTGTTGCTTCTGGAAGAACGCATGCTCGGTGCGGTGTGCAGTCTCAGGTGAGGTTGGTGATTCTGCTTTTTGCCTCCTTTAAAACTTGGTGGTTATTTGCAATTATTTCAGAATGGCGTAGCTGCTTCAGGTCTCTTCCCCCTGGTCCCTGTGGTGGCTGATTGCCTCAGAACAGTTCCTGGGGAGCAGGGGCGCCCCAGCGATGGGTCAGCAGAGTGAAAGAAGACCCTGGAGCCACTCGTAGTTTTGCACATTTCTTTTTGAGAGTGTTACTTGAATCTGTCCCAACCACAGGAGAGCATTGAAGATAACAGAGGGGACTCAGATGTCCACGGCTTAGCCCACCCCGGCAGTGTCAGGTAGATAGCAAAGGAGCATGGGGCAGAAATGCTGGAGGGGTGAGCTGAGGTCTTGTCTTCTCCTTTGTGACTGTGTATCCAGTCGGGTGGCGCTGTGCTGTGTGAGCATTAAAGTCTGTGACTACCTGTCACCAGCTGCCCCGTGTCTTCATTTCTCACTGTGCACTTGATGTTACCATATTTATTTTAAGAGAGCACTAAAATGTAATAAAGTAATGAGCTGGCTTTCTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(67.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]