MmuINT1006008 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25926838-25933709:-
Coord C1 exon
chr2:25933591-25933709
Coord A exon
chr2:25930029-25933590
Coord C2 exon
chr2:25926838-25930028
Length
3562 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CATCTCTTCCTACTCCCCAGGAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCCTAAACTCTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAATGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAGCCTCACAAGAATTCAATATTGGAG
Seq A exon
GCAAGTGTCAAATTTTATGGTGGTTATACATAGAATAAAAATAAATTCTGTTAGCCTTTGCTGTTAATGCCAGAGGTATGTTCTCTTCTGTTATTTTAAGCTACCCTGTTACTGAATAGCCATGGAGTCTTTTTCTCCTAATTATCAAGTAGAGGGGTGTGTGTCCTGAAGCATGAACACAGAATTCTCTGTAGGGTTATGGGAGACCCCATAGAAGAACAGGATTTTGTCAGAAAGGTGGATTACTAATTCAGTTAATGGTTTCATTTGGTTCAGAGCTAGACATAGAAGATAAGAGGTATCCTCTTCAGCCGTTCATGGTAGGTATGGCGTGCTGGCCATGCGAGGGCCAGGACCTGGTCCAGTGGGCCACATTCCTGGGGGGAGAGGAGACTGTTTCTGTGGCTATAGATGTGACTTGTTTCTGTTTTTATTTTCTGGTGCTGACAGTGGAACACAGAGCCTAATGCATATATAGTAGACAAGTACCGTGCCACCCAGCAACCCACTTTGTCCCCAGAGTAGAGTAGATATTTTTAAATGGCAGTGCACTTGAGACAGAAAAGAGGCAGGTGACTCTGCTGTCCTGCTAGTGAGTGCCCATGGCTGAAGGCAGAAGTTAGAAGGGTGGGCCTTGGAGGCACTTTGGGCACCTGAGTCACCAAGAACTGAAAAGTTGGGTCAGGTGGAAAACTACTCGTCTTTCCTGTGTCAGTTGTCACTTCCTTGAGGCTGTTTGTGTCTGCTGGTTTGCTGCTTTGTGTCTGCTCATGCCTATAATGTCAGCATTTAAGAGACTGAGGCAGGAGGATTCCTATGAGATTGAAGCTAGCTTGGACTATAGTATAAGACTCTCAAAAAAAGAGAGAGAGAGAGAACAAGAAAAGATGAGAGATGTTAGTAGCCTTTCAAGTTCAAGAGTCTGGAGACAGTTAGAAAGTGAGGGTCAAAGTTAGGGTTTGACATGCTCTTCACAATTGGGAACTGTGAGTATGTGTGCTGGGAGGGAGGCCACATCCGCACAGTGAATGCTTAGAGTGTGTGTATTGGTGAGCCCTGTGCAGTGGCCTAGGGAGGACTGCAGCCAGCATAATATGCTGCATCTTCAGCAGTAGGGTCTTACCGTCTAGTGAGAGTATGCAGCCAAGGACAATGGCAGGATTCTATCTATGTTTGGGGGCCTTTGGCCTCCTTGTAAGGAACTATTCCATGCTTGACACTGAGGTCTGTTGTTTTAATAACACAGGGTTTCCTGGGAGGAACTTTGCAGGGCATCTCCACTCCTTTAAAATTCCTCTTAAAATTTTTTATATTTTAATAAAGTTAGAAATTAGTGGGTTTCCATAAGACTTTGCTATACATCCTTTATATTATTATTATTATTATTGTTGTTGTTTTGTTTTGTTTTATTTCTTTTAAAAATATTTATTTTTATTTTATATGTTATGGATATTTTGCCTGTTTGTATGTCTGGGCACCGTGTGACCAGAAGAAGGTGTTGGATCCTCTAGAACTGGAATTACAGATGGTCGTGAGCTACCATGAGGTGCCAGGAGTTGAACTCCATCCTCTGAAAGAGCAGGAAGTGCTTTTAAGTGCTGAACCTTCTCTCCAGCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTATTTTTTAACTCAACTGTATTCTTTCACATGGTACCTAGTCAGCCATGTAAAACTTAATTCCAAACTCTAAAGGGAAGGCAGAGTTAATGTGATGGTCAGCCAGCTCAGTACAAGGAGCCTTCCTGTCAGCCATTGATTTGGACACCCAGGAAGTTAAGTACCAGCTTCCTTACAGAGCCACACTCCAGGAAATGGGTGAGGGACCCTGATACACAACAGCTGCCATGCCTGCAGGTGGCGCTCTTCTTCCTGACCAGAGCTCATTCAGCCATGTTTAAACACCGTTCATATAGGTTAGGTCAGTATTGTATACAGACTTAGTTTTCTTTTTCTATTTAATTTTTTACATTTGTAGGTTGATAGTGGCTGGAGAGAGATCTCAATGGTTAAGAGCACTGGCTGCACTTCTAGAAGCTGGGGTTTGACTCTTAGGCCCACCTGGCAGGTCACCACCGTCTGTAACTCTAATACTAGGGGCACCACTGCCCTCTTCTGGCTTTCATGTGGTACACAGACAAACATGTAGGCAAAACATTCTGGGTCAGTGAGGTGGCTCAGCAAATACTGACAGCATGAGTTTGATCCTCGGAACACATGCGTAGCTGAAAGGGGAGAACCAGTTTAAAAAGTTGTCCTCTGACCTACACACGTGTACCCTTTCCATCATACACATGTACATACTACAAAGGATAGACAATAATAAGCCCATTACATTACACTGGCAAAATCAAATGTTTTGGAAATTGTCTCTTCTGAAGCAAAGATAAGCCATTGTTTTATATTTTTATAACTCTTAAATTTTCGGCTTTATGGGCGAGAACTGGGACCTCCTTTTGGTCTGGCACACCCTGCTTTTTGGGTGGCCTCAGAGTCTCTTTTGCACTCACTGGAGATGGTAGGCTGAGATTATAACACTGCAGTCTGATGCCAGGAAAGTTCAGGAGCCCCCACCATACTCAGGAACTGCTGATACCGAGAGTTTATGTGGAGGAGTGCACAATGTAGGACTGTATTCTCACACACTGCATAGCAAAGCCTGGTAGCAACGTCAATAGGTTGTTGGCTGCAGGTTCTTTCTTGGTAATAGCTTTATTAGAGTGGGATGTGGTGGCACATGCCATTGGTCCCAGCACTCAGGAAGCAGAGGCAGGGAGATCTCTGGGTTTAAGGCCCACCTGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTACACAGAGAACCCTGTCTTGGCTGGAGGGGGAGGGGTAAAATCTAGACTTTAGTTCACAAATGCTACCCTTTGAAAGCCATCACTCAGTAGGTTTCTGTGTATTTAGTTCAGTCACTGGTCTACATGCGGTCTGTCTCCTTGGATGTCCTTATTCTTGACTTTGCATATAGAAGGAAGACTCAGACATGTAAGTGGCCATGGTAGTCAGGACTTGGAGAGAGTGTGGTCACAGGATGTCATTTGGTACAGTGTGATGAGCCGCAGACAGTTTTCGCAGTTTCCTTGAGAACAGACTCCACGTCCACTGTGGAGAGCAGCTGACTACATCATTTCATATCTGCCCTCATAGTCTTCTTTATTTTAGCATTCATTGTGAACTGGTGCTCACTTGGTTTTGATTTACGTTTCTCCACAGCATGGAGCTGTGAAGCATCTTTTTATATGATTCCTCAGTTTGTCTCAGCAGCATTTTTCCTTGCTTGCTCAGAGTCTTTAGTAAAATCTCATTGGCCAGCCATAGCTTTTTTGAGTGGGGAGGCTGTGCTGAACCTGTTTTGTCTGTCTTAAAAGAGGATGTTTATTGGACCCTTACTGCCTTGGAACAATACCTACCCATTGGACAACAATGGGAATCTAGGGTGTAAGAGTGACATTCAGTGTTTTCCATCTCTTCCTACTCCCCAG
Seq C2 exon
GAGCTGGAGAAGTGTGATGCCAACCACTATATTATTCTGTTCCGAGATGCGGGCTGCCAGTTCAGGGCACTTTACTGCTACCAACCCGACACTGAAGAAATCTACAAACTCACTGGCACGGGGCCAAAAAGCATCACCAAGAAGATGATTGACAAACTATATAAATACAGCTCAGACCGAAAGCAGTTTAACCTGATCCCAGCCAAGACCATGTCAGTCAGCGTGGATGCACTCACGATCCATAACCACTTGTGGCAGCCCAAGCGGCCCACGGTGCCAAAGAAGACCCAGACTCGTAAGTGACCATGGCAACCAGGACTCTGAGAGGTTGTGCTGACGGGATCCCTATTTATTATTTTCATCTACTTGGTACGAAGTTGATGAGCCATGGACAGTTTTCTACAGCGGTTCCTAGAGAACAGAGAAGATGCTCTCTCCCCTGCACACATGGATGCTGGGCATGACATATGCAGGAGTGAGTCCTGTGCTTTCATGGGCATGGCTGCTGTGGCCCTGCTGACCACTGAGATCCTCAGAATAAGGGACACCATGGAGTGAGATCCTGGCCTGTGGGCCCCTCACTTGAAGTTCTTCAGAATAAGTTAAATGTGATCTGCTCTCTGGCCTCCCTTCACCCCTGTGCACATTGCCTGATGCCCCATGTTGGCCAGCTGTAATCGTGCGTGATTATAGGGCCAAGGCTCATTCGGGTCAGGGTGTTTGAATGTCTTCATAAAAGGAGTTCGTATGGGAAATCTTTTTCATTTTAGAAATTGTATAATATTTATTGACTGTGTCTACTGCCAACCTTTATATCCAGTTCTAAGATTCTGAAAAAAAGAAAAGAAAAAAAAAAACCTGTTCCTTGCTGCTCAGAAAAAGTTTACTGAAAATGTCAGTTCACTAAAAGCACTGAAATCGGTAAAGTTTGTCTTCTGCTAAAATGACGTTTACATATGTGGAGTGAGTATTTCTGCCACACAGTTGGGGGCTGTGGGTACTGCTAGCTGATGCTGGCCTCATTGGAAGCCGGCAGCTAAGCCGGCTTAGCCACCACTGGTTAGGTCTGGGGAATGTGCTGGCATGTTCACTCTGATAAAGGCAGATTTTGGTATAGTAGCGTACTTTCCACCCTTGGCTGCCGGTTCCTTTGTGGTGCTGTGAAGGCCTGGCTTACCTACCACGGTTCTTGCTTCTGGAGGAACAGCGTGCTCAGTGCAGTGTGCAGTCTCAGGTGAGGTGGGTAATTCTGCTTTTTGCCTCTTTTAAAACTTGGTGGTTATTTGCGGTTATTTCAGAATGGTGTAGCTGCTTTGGGTCTCTTCCCCGCTGGCCCCTGTGGCAGCTGCCTGCCTCAGAACAGGCGTTCCTGGGGAGCAGAGGTGCCCCAGCGATGGATCAGCTATGTGAAGACCCTGGAGCCACTTGTAGTTTTGCACATTTCTTTTTGAGAGTGTTACTTGAATCTGTCTTAACTGCAGGAGAGACTTGAAGATCATAGAGGGAACTCAGACATCTTAGTGTTAGCGCTAGCAGTGTCATGTAGACAGAGGAAAGGAGCATGGGACAGAACGCCGGAGGCGTGAGGCGAGGTCTTGTCTTCTCTTCCTTGGTGACTGTGTATCCAGTCAGGGGTGGCGCTGTGCTGTATGAGCATTAAAGTCTGTGGCCACCTGTCACTGGATGCCCTGTGTGTCTTCATTTCTCACTGTGCACTTGATGTTACCATATTTATTTTAAGAGAGCACTAAAATATAATAAAGTAATGAGCTGGCTTTCTGTTAACCATGTGTGTGGTTGTCACAACTCCTTCTGCTGACAGTGTCCCACATCTTCTGGCTTCAGGGCAGCTGCGCATGACTTTTGGGTTACCTAGGAATTTATTTTTCATGAAGAGTTGGAAGACCTGGTGTAGAGCAGGAAGTTGCATTTCTGCTCGACTTTTAATACGGTGACTTGGCATGTGGCCTGTCCTGAAGGCTGTCTCAGAACGCAGGGTCTGCATGTGAAGTACAGTGCCAGTGTCTCAAGGCCGGGCTGTGGAGGCCATGTGGCTTGATGGCTCAGAAGCACTCGTGCCTTCTGTGTTCCATGACACAGAAGTAGTTTTGATTTTTTTTTTAATTAGGAAGTTTCCGGTACAGGATTTTGTGGTGGTGATCTGGAGCCTCCAGGGTGTGGGTACACTGTCTTGACCAACTGTGCTGGGAAGGCTACTCAGCTTTTCGGGCAGAAAGTGCCAAGAAATTGAATACATGACGACTCATGCAGCTCATTCCTTAGTAACAACAGACCCCCCCGAGGAGCCCAGGTCGGTTGGCATTAAAAATATTTCTCAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCAAGCACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTTGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAATAAAAAAAAAAAATCTCAGAACTAGATGTGCAGGTCTACATGTCTGTGTCGATGTGGGATGTACCTGTGTGTGCGTATATGAGTATGTGCACACAAACATGTGCATATGGCCTGTGTACACGTGTGTATGCATGCCAAAGATAGCGTTTCCAGTGTGACCTTTTGACCTGGTATTCTCGGTGTGTTCCTGCAATACAATCTCCAATCAGACTTTTAAGGCCCAGACTGCTTCAGGCAACATTGAAAAGTGGCATAATACAAAATTTACTTCTAGATTGTTTGAAACTATGGTTGTTACTTGGAAGAAGAAAGTGTTAAAAGTCCATTTTTCTTGTTGAAAGTTAATCAACTTGAGTAAACCTTTATAGATTGGTGCTGGTTTACCTAGTGAAATGGCTTTGATCTTGGTTACCTGAGCCTATTGGTGATTTCATTCTATCTGTGTCCAGTACCACATGTGTAAAGCCAGTTCTAACTCCTGTTTTGTGACTATGGCCAAGTCACAAGCCCCAACTGGGAACGAGCCATGCCCAGCATCCTCTTGTTTCTCACTGATTCCTTGGCAATAAACTTGTACCTTGCTGACTCAGGGTCTTCCTGGTGTCTGAGGTGCACTCTGGAGGTGCTTTTGGTATCTGGTATCACTGGTGTTCTGAGCTTTGTGTTGCTGTGATAAATGAAAACCATAATAAAAGCCACGACCAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(68.2=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types