DreINT0040921 @ danRer10
Intron Retention
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64934177-64937421:-
Coord C1 exon
chr5:64937303-64937421
Coord A exon
chr5:64935800-64937302
Coord C2 exon
chr5:64934177-64935799
Length
1503 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GATTGTGTCTTGACCGGCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GACCCAAACTTTTCAAGGAACCAAGTGCGAAGTCCAACAAGCCGATAATCCACAACGCCATTTCTCATTGCTGCTTAGCAGGGAAAGTCAACGAACCGCAGAAGAACTCCATTCTTGAG
Seq A exon
GTGTGTGACTTCACAGATTTATCATGAAAATTTGTTTATACAGACCCCTAGTTTTTTTTGGTGCTTTTAAGCAATAAAATGACTTTGTGACTGATTTTATGTCTGTAATTCCCAGAAATTTGCAAACAATTTTGTGATCTTATCTAACATATTAGGTAGCCGACTATGTTCGGTGTGCTATCTGACACAATGACAAGGACACAAATCATAAAAATAAAGCTTCTTTATTTTGTTCTTTTGTCAAGACAAGATCTAAAACAGTTCTAAAATGGTAGGGATTAAGCCCAAGGAAGGCTGTATTAATTTTATGCACGAATTTACTTTTTCTCTCTCTCAGATTTTGTTCCCCGGAGCATCTGACATAATGTACCTCGTTCAGGAAATGCATTAGGGCTTCCTCTACCGCACAGGTGTCAAACTCAGTTCCAAAAGGGCCGCAGCTCTGCACAGTTTAGTTCCAACCCTAATTAAACACAGTTGATCAAACTAATTGAGTCCTTCAGGCTTGTTTGAAACCTACAGGTAAGTGTGTTGGAGCAGGGGTGGAACTAAATTGTGCGGGGCTTCGGCCCTCCAGGAATTGAGTTTGACACCCCTGCTCTACCATAGTAAACCTAAAACACGGATTGCCAACCAAAAAACTTGTTGCAGGGAAGCGTTTTGGTTTTCTCTTGTTAATTGCAGGGAAAGAGTTCAACAAAATCACTTAGCGATTTCATGAACACCAGCCATACATGTAAAAGCACAAATAAGGTCTTTCAATTCGGTCAAGTCCAGCGGCCGTCGTCCTTCAACCAATCTCCATTATTGTAAGCTGCTTACTTGTCTGTCTGTTGCATTGCTCTATTTTTGAGATGTTTGCTTACACTTTTGTTGCAGTCTGAAGCACGTCAAACGCACAAAATGGCCAATTTGCGCCACAGGATGTCTAATCCCATCTTTGCATTGTCTTCACACGTGTGTGAAGTCTTCATTTGCGTGTGCTTACTGCACAGGCTGCAAAACACCCACCCACCCCCATGTAATGTAATGATTGTGAGGGCGTAAGTGGCATGTCATTTTGTCGAAAGACACTCAAATACATCACATAAGCTGCGAATGCAACGTCTATAAGTCATGTAAAACATTTATTTGCAAGCTGAAATAAATATCATTTGATTATATGGTTTGGAATTAGATGTTTTATGATTTTTAGTTGGATTCAGCGATTGCGGAATCGTGAAAAACTAGGGCAGGGGTGGCCAACCATGTTTCTGCAGAGCCCCCTTCCTGTAGATTTCAGTTGCAGCCCATATCAAACACACCTGCCTGCTATTATCACCTGGTGTTCAGGTCCTGATTAATTGGTTCAGGTGTGTTTGATATGGGTAGCAACTGAAATCTGCAGGAAGGTGGCTCTCCAGGAACAGGGTTGGCCACCCCTGCCCTAGGGGGAGTCTGTTTATAATACTAAATCTTGATGGTGAACAAAATTAATTGAAATGATTGTGTCTTGACCGGCAG
Seq C2 exon
GAGCTGGAGAGGTGTGAATCCAACCACTTGATGATTCTCTTCCGGGACAGCGGCTGCCAATTCAGAGCCCTTTACTCATACTTCCCTGACACAGAGGAGATCCACAAGCTCACCGGCACCGGGCCCAAGAGCATCACTAAAAAGATGATCGACAAACTCTATAAGTACAGCTCGGACCGCAAGCAGTTCACTGTAATCCCCGCCAAGACTGTGTCTGTGAGTGTAGATGCGCTGACTATCCATAACCACCTGTGGCAAGCTAAAAGACCCGCAGGGCCAAAAAAGAGCGCAAAGTGAAGTCAGATGACACTATTTTTTTTCCATCGAGGTCAGTAGTCACTTTGAATGGAAGAGGTTCGCTGGACAAACAGGCATGAGTTATCATGCACTTCATTTGAATGTGTTTTGGGTTGAAGTAGTACCCACAATCCTGTGGTGTTTTTACATGAATCACTCTTTTGTTACTTGAAGTATTTATTAGTTTGGCACTGATTAGCTCGTTTAAACGAAGCGCTTCCCCCATGATTGTTTGCCTTTTTTTTTACTATTATCTACTTAACGTCTTTCAAAACATGTCTGCTGCCTCCAAGGACTGCCGGAACTCGAATTAATGTACAAAACTTAGCTGACTTGCCTCTCAACCAAATTTTTTTTGCCTCCAAAAACATGCTGCTCCTTTGTTGTCGCCGGGATAATCCCGGGTCTGCATACTTTTGGCCTTCATGCGTTGTGGTACTGTCTGTTTATTCAACTCTTTCAAATAAGCGCCTCGGTTTTAACCCCCCCGCTTGATGGTCTTTTTTGATTGGGAATCAAACAGACCTTGATAAGTGTCAGATGCAGTTTACTTCTCTTTCTCGGTAGCGGCCTCTTCCACTGGACAGTCTGTACTATGGTGCACTTATGATCATGTTTTAGTGCTTTTATTATCATGCAATGTAACCATGTTGATGTTGGCACTGGAGCTTTTTTTTTTTTTTTTTTCCCTCATGCAGAAGAGCAGCATGCTCTGTTATGAAGAGTGTCGCTGTAAACGATTTGAATGACAGTATTTAATATATTCACAATCGGTTACTTCCCTTGCAGTCGCTGTCTAATTATTTACCAAGGTTGAAAACATTCCTCAGCGAAACAAGTCAACACTGCCGACGTCCTTTTGCGTGTAGACGCTCGAAAAAACACTCACAGAAGCCTCGTGTCTGGTGTCAAGATCAATTGAGTGTTGCACATGCACTTTATTTTTTTGCTCATGACGGTGTAGAGGTTTAAAGGGCTTAACGAAACTGTTTTTACTCCTAAAGCTTCAGTAGATTTGAAGGTACTCTGGTAGACACTGAGAAATAAACACTATTAACACCGGAAAAGAGCACACTGACAGCCCCTTACGTCTCTTAAACTACTGTTTCCAAACCATAGGTGTTAGAATTGTCATTTTAAACTGCATTTTTTTGTATATTATGTGTGTTTTTATATATTACCTAAAAGATTGTATTGATGTTGATCACTTTTTTTTTTTCTTTTTAAACACTACTCTTCGTTTTTTTTGGCCATTTTGCTTCCTTTATCTTACCATTATTTATTTTAAGCAAGACTCTGAGAATTAATAAATATTTCAAGTCAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122:ENSDART00000147707:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(67.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGATAATCCACAACGCC
R:
CGGGTCTTTTAGCTTGCCACA
Band lengths:
352-1855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]