BtaINT0031079 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103446831-103451151:-
Coord C1 exon
chr11:103451033-103451151
Coord A exon
chr11:103448729-103451032
Coord C2 exon
chr11:103446831-103448728
Length
2304 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GCTTCATGCCCCGCCCGCAGGAG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTCCCAAGCTGTTTAAGGAGCCCAGCAGCAAATCCAACAAACCAATCATTCACAACGCTATATCCCATTGCTGTCTCGCAGGAAAAGTGAACGAACCTCACAAAAATTCAATATTAGAG
Seq A exon
GCAAGTATCAAAGTTTCACACCTAAGTTTTCATGTAGAGGAAGGGTATTTGTGAATGAAGGTTTTCCCTAGAGGGGAGAACCCTGATGGCTGACAGAAGAGGCCTCTGTCTCACGCGTGTGATCAGGTGTGGGCACACAGTCCCGTCTGCTCATGCCGCTCGGCGTGCCCTGGCCCTCACTTTCAGCATGCTCCACGAAAGAGCAGACCTCGGACCAGCAGGACAGAGGCTGCACTGGTCGGGCAGGGTCTGGGGTACAGCCCTGAGGGAAGGGGAGGCGGGTGGAGCTCCTCACAGGGAAGCCAGCTGGCTTGGCATGCTGTCGAGGAGGGGGCTGTCCTCGAGTGTCATAGACAGTGTTGGGGTGGAGACAGGGCGCCCCAGCTCTGCACTGGGGCCGCTGGAGAAATGGAAGTCTGAGGTAAACTGCTGGTTATCTGTGTCCTCTTCATGGTTCCTGCCCGGGGCCGCAGGCCTCAGTCACTGTTCATGGTGAGTGGCGGTGGCCTCAGCAGGCGGAGAGTCCGGATGGAGGGTTCGGGTTAGGACTGGGTGCGTGCCTGTAGCCTCACGGGGGCTCCTCTCTGCCCTGGGTCACCAGCTCCTCAGCTGCCGGCGGGTCCAAGGCGGCCGTGTAGTGGCACCCACAGGACGTGCTGCCAGCTTGGCTCAGACATCACAGCGTGCAGACAGCCACAGGCCGGCCGGAGGGCGGCCCGGCTCCCAGAAGCCTGTCCACAAAAGCGGTTGGACTGATTCTGACTGTGGCTGTGGTCAGACGGTGATGAATGGTCTGGAAGGAGTGGAGGGGCAGCATGGGGCTCCAGGGCAGCTGTGGCAGGCTGGTCAGCCAGCGGGGTCTCACTGGAAGGGGTCGTTGAGCAGAGGCCTGGAGTCGGGAGGGGTGCCGTGCAGGTTTGGGGGCTCCCCAGGCTCCAGGTGGGACTGATCCCCCAGTTTGGCTGGAACCAGGGAGCTCGGGGTCAGAGGTCAAGGGGTCGCTACCGTAGGGCCTCTGTGGGGAGTGGCCGCGTGGGCTGCCGGCCTGGGACAGGCGCGTGAGGGTGGGGGCACGGCGGGAGGGTCTGGAGCTGCTCCGCCTCCAGTTTGGCTCGTGTTCAGACAGTTTTTACGTTGCTGAAATTGCTGAGATTTTGCCTTTTACTCTTAATTTTATAAATATGTGAATTTATTTAAAATAACAGGAAGCCCATTAGATACTGAGAAGAATAGTATCTATTTGTGAAAATCAGTTTTCTATAAACACAAATAGCGGGAGGAGGGGCACTGTTTTGCGTCACAGGGATCTTCTTAGCCCCTGGCTTCCCCACCTCCATGCGCAGTCTCACAGACCGCGGGTCCTGTGGCCACTGGACGGCTCCAGTGAACAGGGCGGCGGGGGGGCCAGATGAGGTCTGAGAGGGACGAGGAGGCGTCCTCACGGTGAGCGGAGACTCTCGGAGGGTGCGGCACCCCAGACCAGGCTCAGAGAACTGCAGGGCAGGAAGCTAAGCATTCTCAAGTGTGAGGGGCGTTGGGCAACATGTTTTTGCGGTAACGACGTTCTGAGGTTGAGAGCCTGGTGCGGCAGACGCCGTAACAAGGAGCGGCCGTCAGCCCTGCTCCAGGTCCTTTCTGTGACGGCGCTGGCGAGGGATGCTTCTCCCAGTGTGAAGCCCCCTGTAGCGGCTTCAGGGCTGCAGTCAGGGCCAGGACCGCCCCCCAGAAGGACCCTGGACCGGGGCCGCTCCCCTGGCCCCCGGCTCTGTGGTCCCCTCAGCGTTCGCCACCCCCCGGTGGTGTCACTTGGAGGGGCTCATCCCGAGGCGGCCCTTGGGCGGCGTCTCTCACTGGCAGGATGTCGTCACGCCCATCCGAGGGGTAGTGCCGTGGTGCCTCACTCCTTCCTGCGCCTGAAGAGCGTCCCGTTTCCGTGCAGACCACAGCTTGTCCATCCGTCTGCTGAGGGGCGTCCGGGTGGCGTCAGCCTTTGATCGTTGTGAATAATGCGGCTGGAGACGTCTGCACGCGTTTTCCCTGGATGCGTGTTTTAATTTCTCTGGAGCGCATCCCTGAGAAAAGAGCTGCTGAGTCCTGTGGTGACTCGGTGTTCCAGCCTCCGAACACCTGCCCGACTCGTTTCCACGGCGGCTGTGCCCTACCCTCTGGCAGTGGGGAACAGGGCCCGTTTCCTCACGCCCGCTCCGGCCCTGGTCTAGCCTGGTGGGTGAGCAGGCGGTGGGCGCGGGGTCCGACAGCAGGGGCTCACACTCCGTGTCTCCCCGCTTCATGCCCCGCCCGCAG
Seq C2 exon
GAGCTGGAGAAGTGTGATGCCAACCACTACATCATCCTGTTCCGGGACGCCGGCTGCCAGTTCCGGGCTCTCTACTGCTACTATCCCGACACCGAGGAGATCTGCAAGCTGACGGGCACCGGGCCCAAGAGCATCGCCAAGAAGATGATCGACAAGCTGTACAAGTACAGCTCGGACCGGAAGCAGTTCAGCCTCATCCCGGCCAAGACCATGTCGGTCAGTGTGGACGCGCTCACCATCCACAACCACCTGTGGCAGCCCAAGCGGCCCTCGGCGCCAAAGAAGACGCAGACTCGCAAATGACCCCGGCGCGGCAAAGTCTGCGGACGCCGGCTGGGTGGATACTTATTGCTTTCTTCCTTTTGGGTACGAAGTATGCAGAATCACAGACCTTTTTCAAAGAGGCTTCTAGACAACAAGAGAAAACCCCTCCCTGAGCCCCCGGCACCAGGACGGGGGTGGAGCCGGGGCCCGATCGCTCCCAGCGGTCGCCCCGGCCCTGCTGCTCGGAGGCTCCCGGCCGGGGTGTGTCCCAGAGCTGCCGGCAGTGGGGTCCTTTTACTTGAAGTTCTCCTTCAGTGTAAATTAAAGTGATCTCCTTTGCTTCCTTGCCTCCCACCTCACCCCTTTTTGCACATGACCTGACCCCCCGCTCTTGTGGCTGGCTGTGATCTCGCGGGATCACAGGACTGAGACTTGGTCTCGGGTCAGGGTGTTTGAATGTCTGTAGGAAAGGAGTTCATGGTGGGGAGTTGTTTTCATTTGAGAATTGTATAATATTTATTGATTGTGTCTACTGCCAACGTTTATATCCAATTCTAAGATTTCTGGGGAAAAAAAAACAAAAATTCTTGTTTCTTGCTGCTCAGAAAAAGTTTACTGAAAATAGCAGTTCCCTAAAAGCACTGAAATCTGCGGTCTGTCTTCTGCTAGAATAACGTTTACAAGTGCGGCGGGTTCGCCCGCCACGCAGTCACGAGGGAGGCACGGTACTCTGCTGGCGTCTGCCCGGCTGGAGGCAGGCGAGCCGTGCCAACACAGCCCTCGCCCGGTACGTTGGGGGTCGCGCGCCCATGATTGTTCACTTTAATAAAGACAGATTTTTTGGTAAAGTAGAATATTTTTTACTCTGAGCATGTTTCTCTTAAAAAGGTGATGATGCACTTAAGCTGACAGTTCTTTCTAGTGTTTTTATCACGTCCTCACTCGTCCCGTCCCAATTCTGGCTTCCGGAAGAGCTTCGGGCCCGCCGGGGAGCTTGCGGTTCTCCGTGTCGACAGAGCATTTGGTCGCGTTGCCTATTCAAACAGAAAGTGGTCGTTGGCAGCTGTTTGGGAACCACAAGTCCACGGGACACTCCGGTCCCCCCCACCTCCCCTCCGATGGTGGGCCTGGTGCTCCTGCCGGCCCCCGGTGCTTCTCGGGACCAGACCTTCCGGCGCGGCCTGCACACACGCTGCCTGTGCGACTGACCCGCTGACCCGACCGCCGGGACATTCTGGAGTCACTTATTTAGTTTTGCACATTTTTTTTTTCTTGGGAGTGTTACTTGAATTTATCTCAAAACTGCAGAAAGAAAAAAAAAAAACTGAAGCTCAACGGAGAGAAAAAGTTAAAACATGCAAACTGGTCATTTCCAACGCAAAGGGGAGTGACCGTGTCCATGAGGACGGAGGGGACGCGGTGGCCTCGCCCTGCCGGTTGGGTCGTCTGTACATAGGTAGGCCTGTGCGGTTTCTCCAGTGCTGAGTGTTGAAACAGTCCTGAGTGAACTCCTGTGACATGCCGTTCACACGTGTGCTTTACTTCTCACTGTATGTTTGATAATTATATTATTATATTTATTTTAAGAAAGCACTAAAATGTAATAAAGTAATTAACTAATTTGCTTTTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(67.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development