GgaINT0125783 @ galGal3
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8900046-8900677:+
Coord C1 exon
chr17:8900046-8900164
Coord A exon
chr17:8900165-8900411
Coord C2 exon
chr17:8900412-8900677
Length
247 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTTGCTTATTTTTAATGCAGGAA
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTCCAAAATTATTTAAGGAACCTAGCAGCAAATCAAACAAACCCATTATTCACAATGCTATATCTCATTGCTGTCTTGCTGGAAAAGTGAATGAACCACACAAGAATTCAATTTTAGAG
Seq A exon
GTAAGCAATAAAACAGAGAATTATGAACGCACTCGCAATGAAGTTCACCTGTTGTGCTCACTTCATAATCCTACTCATCCATGGTGGTGTATACCATTTCCTGAAGTGTACCTGTGAAATGAGGAATGCTGTTCGAGAAGAACCCACTTTTTTAGCTATGTGAGAAAGCTAAAAGCTGGGCACATCGTATGGGAATTTTCACTGTGGGCAGTCTCTTTGTATGTTTACTTGCTTATTTTTAATGCAG
Seq C2 exon
GAACTTGAAAAATGTGATGCCAACCACTACATCATTCTGTTCCGTGATGCTGGCTGCCAGTTCAGAGCACTTTACTGCTACTACCCAGATACTGAAGAAATCTACAAGCTGACTGGAACAGGGCCAAAGAGCATCACCAAGAAAATGATTGACAAACTGTACAAATACAGTTCAGACAGAAAACAGTTCAATGTGATTCCAGCCAAAACCATGTCTGTCAGTGTGGATGCTCTTACTATCCATAACCACTTGTGGCAAGCCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(92.9=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(0.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCATTGCTGTCTTGCTGGA
R:
AAGAGCATCCACACTGACAGAC
Band lengths:
292-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]