HsaINT0027165 @ hg38
Intron Retention
Gene
ENSG00000130559 | CAMSAP1
Description
calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr9:135808487-135815215:-
Coord C1 exon
chr9:135815097-135815215
Coord A exon
chr9:135811612-135815096
Coord C2 exon
chr9:135808487-135811611
Length
3485 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTTTTCTCTCTCTGCACAGGAG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GTCCCAAGCTCTTTAAGGAGCCCAGTAGTAAATCAAACAAGCCGATTATTCACAATGCCATATCCCATTGCTGCCTGGCTGGAAAAGTGAACGAACCCCACAAGAATTCCATATTGGAG
Seq A exon
GCAAGTATCATGTTTCAACCTCAGTTTTTATGTGGAATAAAAAGTGTTTATAAATTAAGGGTTCTTTTTAAAAGAAAACACCCCTAATCTTTGATGCATGAGAGTTACTAGGGAGAATGCAGATTTCAAGGAAGAGGCCGTTCCAGGCAGGTGGGAGTGAGGAGTGCCAAGGTCCAGGGGCTGCAGTGAGCCTGTGCTGGAGGAACACCCAGGAGGACGGGGCAGGGTTCAGAGGCTACATCCTCATGTGGTGCCTCTGGGCTGAGGAAAGACATAGTTCTACTCAGTGAGATAGTGGATGCAGGTGTGGGCAGAGGAGAGCCAGGAACCCACCTGCCCTTCCCAGTAGATCAGAGCAGTCAGCAGGGAAGCCAGGGAGGCAGCCTGGAGGTGAATGAGGAACAGGGGCCAGGGCTGGAGCGGTGGGTTGGGGAGGACCGAGGACGGAGGACGGAGTGGTGGGTTGGGGAAGATGGAGTGGGGAGGGAGGGAAGAGGCGCGCACCCGCTGAGCGTGTGGACTCCGGAGCACCCAGTGTGCATGCCCAGGGAGGGGCTTGGAAGCAGGAATCTGAGGGTCCTGCACGGGGTCTAGGCTGGCCCCTGAGGGGCAGGACTGGGATTCCAGGGGAGAGGAGGCAGAGCCACTGGACCCTGCCCCAGATTGAGGCTGGTGTGTGGCCTTAAGTTGCTGGCCTTGGGATACAACGGCTTGTGAATGAGTGAATGAAAATTATGCAACAATCTGTCATCCACCAGAAATTCTGCTTTTTAATAATTAAGACTAACCCCTGGTCCTTAGTTGGTTTAGTTGTAAAAATTAAAGTGACATACGGAATTTCTGACCCACTTTAAAACGGATGTGTTCTTTTCTTGATAGTGAAGATCATCTAGACTAAGAATGGCCCCGACCTAGGCAGGTCTCGTGGCACTGGGGACAGAAGAGGCCATGGTCATGCCCTTCCTGCTTAGATTTCCACACGGAGAGGTGGTTGGCCCCCTGTATCAGTGGCCCCCAGGATCACCCTGCATGCGGAGATGCACTGGAAGGACTCGTGGCCCTCAGTGTGGAGTCGACCCAGGGCTTAGATTTATTCCAGCACTGTGGAGGGAGCCACAGCCACTGGGTGAAGAGGGAGAAGACAGAGGCGGGGCTAGGCCTTGTGCAGCTCCCTCTGCTCTCGTTCTTCCAGCAGTGGATCCACAGCAGCCTGTGGGCCATGGAAAGCCCTTTTGAGACTGGATGCCCTGAGCTCTCCTTGGGGGCTGGTCACAAGGCACACTCCCTGCCCAGTGTGCAGCAGTGTGCCTGACGCCTGGGAGGAAACCAGCGTCAGCGTGCAGACCAGCAGTTCAGGCTCAGGAGGCCCTCCTGTCTTGCCAGTGAGTGACTGGGAGCGAGCTCTGCAGATAGCAAGTTCCCAGGTGCCCACCAAGGGCCGCCCAGCAGGCAGGCCTTTCTAGGACAGCAGCCCTCTCAGCTGTGCCACATAAGCTGTGGGCACCACACGCTTCCTTATCGTGCAGGCAGCAATAAGTAAATAAGATGAACCCCACTCCCCACAGTCCCGCTGTCGCTACAAATTAAATGTTTCTTTCTTTTTGGCATCTAATTCTGTTCATATTTAAACACAGTGAGTAGGGTTGAAATCAGTATTATATAGACAGTTTTGGATTCTTTTAAAAAATACGTATTATTTAAAATAATAAACCCCATTATATGCTGATACATTGCATATTTATGAAAAGTAACTTTTCTAAAGCCAAATAAATAGAAGAGTGGCATTGACATAAGAGGGCTGGCATCTCAGCCGCTCGGGCCCTCCGTCCATTACAACCACACAGCCCAGGGCCTTGGGAAGGTTCTGCCGCACACTTGGGAGAGGCGATGAGGCCTTAGCCTTTCGAGGTCGAGGGCTTGACCCTGAGATTCCTGGGAAGGCCTCAGGATGCCTGGGCCGCATGTGGAGAACTGTGAGGGCAGACCCAGGTGCACTCCCATTCCCAGGCGTGTGGAGGGTTTGTTTTTAAAAGTTACCAAAACACTTGAAGATACGTTTTAAACTTTAAAATACAATCAACAAACGCGGCGACAGGCATCAGCAGTTTGTCATACTTCAGATTCTTCTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGACTGGAGTACAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCCCTCCAGACTCAAGCGATTCTCTGAGTAGCTCGGACTACAGGCATGTGCCACCACGCCTGGCTAATTTTTGTATCCTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATTCGCCCACCTCAGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACAGCGCCCGGCCCAAACAGCTTTATGAGATATCATTCACATACCGTAAAATTCACCCTTTTAAGTTATACCATTCAGTGGTTTTTAGTACATTAATAGAGTAGCACAACCATCACCACCGCCTAATTTCAGAGCATTTTCATCCTCATAAAAAGAAACTCCACGCCCGTGAACAGTCACCCCCCTAAGTCTTCCCGCGCCCAAGCTCTTGGCGGTCGCCAGTCTGTCTCCATGGATTTGCCTGTTCTGGGCATTTACATAACTGGCATCATAATTATATGGCCTTTTGGGTCAGGCTTCTTTCACTTAGCGTGATGCTCTGAGGTTTCTCAGTGTAGTGTGTACCGGACCTCCATTCCTTTTTGTAGCTGGGTAATGCTCCATTGCATGCTCCGACCCCATGCTGTTCATCTCGTCATCTGCTGATGCACACTTGGGTTGATTCTTCTTCAAACATTTTTTATTGATAGGGAACAGATGTGCATGCTTTTGGGGGTACATGTGATATTTTCGTTTCTACTTTTTGCCTGTGAAGGGATAGTGCTGTTATTTATATGCAGTGTTTTGTATGGATGCGTGTTTTCATTTCCCTTGAGTACATATGTGAGAGAGGAATTGCTGGGTCCCACGGTAACTGCCTGATGGTTTGGAGAAGAGCCAAGTTGTTTTTCACAGCAGCTGCTGTGCTCTGTATCCTTCTGGCAGTGAAAGAGCCCCATGGCTCGCCAGCACTCGTTACCGCCCTGCTTCTGGGTTCCAGCCGTCCTTGTGGGCATGACGCGACGTCTCTTTCTGACTGGCATTTCTCTGGTGGCTGATGATGAGCATCTTTTCATATGCTTTTCCATTTAATCGTAAAAGCATTCTTTTCCCCCTTGCTTGCTTAGACTTCTTAAGTAAAGTCTCAATGGCATATAATGCTCCCGTACAGGGGTCTGCTGTAATTGTTTACAACAGGCAGGCCGTAGCTGACGGGTGGGAGAGCTTCCCACGGAGCGGTGCTGGTTGAGCCGCTGTGGGAGCCCAACTCGTGGCAATTGGAGTGGCCCTGAAGTGTTTGTCTCTTCCCCTTTTCTCTCTCTGCACAG
Seq C2 exon
GAGCTGGAGAAGTGTGATGCCAATCACTACATCATACTGTTTCGTGATGCTGGCTGCCAGTTCAGGGCGCTTTACTGCTACTATCCTGATACTGAGGAAATCTACAAACTCACTGGCACGGGGCCAAAGAACATCACCAAGAAAATGATCGACAAACTGTATAAATACAGCTCAGACCGAAAACAGTTTAACTTGATCCCAGCCAAAACCATGTCTGTCAGTGTGGACGCACTCACAATCCACAACCACCTGTGGCAGCCCAAGCGGCCTGCAGTGCCAAAGAAGGCCCAGACTCGTAAATGACCCCGGTGCAGCTGGCGTCCAAAGGGTGACCCAGACTCGTAAATGATGCCCTTGTGGCTGGCATCCAGAGGGTGCCACGGGGTCCTTATTTATTGTTTTCATCTATTTGGGTACGAAGTGTGCAAAGTCACAGACCTTTTGCAAAGAGGTTTCTAGACAGCAGAAGAAAACCCCTCTCTCAGCGCTCATCTCACGCAGAGGATGCCAGGCAGGGTGAGGATGGGGGAGTAGATGCCGCTTTTGCAGTGGCTCGCACTGCTGTGGCCACTGCTGACCACTGAGGCTCCCAGCGGAGGGTGTTCACAGCCAGGTCCCGGGCCACGGAGCTCCCTTACTTGAAGTTCTCCTTCAGCATAGATTAGACGTGATCCACTTTGCTTTCTTGCTTCTCACCTCGCCCCCTTGCACATTGCCTGACACCCTCATATTGGCCAGCTGTAATCTCGTGACTATGGGACTGAGGCTCAATCTTGGCTTGGGGTGTTTGAATGTCTATAGCAAAGGAATTCATAATGGGAAATCTTTTTCATTTGAGAAATTGTATGATATTTATTGGTTGTGTCTACTGCCAACATTTATATCCAATTCTAAGATTTCTGAAAAAAAATTCTTATCCCTTGCTGCTCAGAAAAAGTTTACGGAAAACACCAGTTCACTAAAAGCACCGAAATCTGCAAAGCCTGTCTTCCGCTAGAACAACGTCTACAAATGTGAAGATGATGACTTCTGGCACGCGGTCATGAGGGTGGGGAATGGCACTAGGAGCTGATGTTTGCCTCATTTAAAGTAGGCAAGCCGAGCCAACTGCAGCCATCATTCATTAAGTTTTGGGTAGTGCTCTAATGGTTTGTTCACTTTAATAAAGACAGATTTTGGTAAAGTAGAATATTTTTCATTCTGAGCATGTTTGTCCCAAAAGGTGATGCACTTAAGCTGACAGTCCCTTCAGTGGTTTTGTTAGGTCACGGCTTGTCCTGTCTGGATTCTGCATCTGGAAGCGCTGCATGCTCTCAGAGGAGCGTGCCGTTTCCCCTGTAGATGGATACTTTTGTTTTGTTGCCTATTTAAAAACAATTAAGTGGTTATTTGCAGTTATTTCAGAACTCCAAGTAAGTGGATGGCTTTGGGTTCTTTCTGCCTTGGTCCCAATGGTGTTGATGCTTCTGTGGAGCGCGGACATTCCCAGGAGCAGGTGCGTGCCAGCCATGGCTGCCAGACACTGCTGCAACTGACCAGCTGCCGGAAGATTCTGGAGCCACTAACATTAGTTTTGCACATATTTTCTTGGGAGTGTTACTTGAATCTATCTCAAACTGCAGAAAAAATCAAAAGATCAATAATTGGGAGAAAAAGAGACAAATTTAACTGTTACATAATTTTAGATAGACAAAAAACATGAGTGAGTCGTGTACATAAGGAGGGAACATGGTACAGAAGGCTAGAAGGAATTATAGGTCTTATTCCCCTTTCCTCAGTCCTTTGAAGAGAAGTACAGTCTCTTGCGATTTTGTATATATCGTGTTCGACACAGCCGCTCTCTGTCCTGTAAATAGGGAACTAAAGGCTGTATGATTTCTCAAGTGCTGAGTTACACAGTCCTGAGTGAGCTTTCTGTTACCATACTTTCACACGTGGGCTTTATTTCTCACTGTATGTTTGATATGATATTACTGTATTTATTTTAAGAAAGCACTAAGATGTAATAAAGTGATGAACTAATTTGCTTTACATTGAATCGTATGTGTGAGGTTGCTGTGGCTCATTTCGCTGACCAGGCGACACCAACTCCTTGCTTTATAGGAGTTTCACATTGTTCTTTACCATGGCCCTATCGAAGTCAGTGGAATTGGATTCTTTTTAATGAAGAGCTAGAAAATATCTGGCATAGAGCTGGAAAATTGCATTCCCATGGGACGTCTGAATCAATTCTGGATTTTCTCCATGGAATGAGTCAGTGTGTGGAACATCCTGAAACTTGTCCTTAAGCGTGTAGTTTTCACTGTTCGTTGCGAGTAAGCACTAATGTGGCATGGACATTCCTGATGTCCCAAGTCCCCAGGCCAGTGTTCGCCTAATGATTGACAGAAGCGTCCCTGCGTTCTTCATGCTTGGACACAGCAACCCTTTTAATTAGTCTTGAAAAGTTTCAGACACAGGATTAATTTTCGTGGTGGTGCTTTTGGGCCTTTCTGGCTTGGGTGGTGGTAAAGTCATGATTTTGCAGTTGATAACACTGACTTATAACTCTGTTTATCAATGTCTCCTATATTCAAAGCCCCTGCAGTGGTATTTGTGTCTCGTTGCAAATTTCTTTCAGCGGAAAGCTTGCACAACTTTCGTTGTGTCTCAGAATTCTAACCTTGTTATTTAAGACAAGCTGCTCTACCCATTTAGGATATAACTTTGTAAAGAAAGTGTAAACCAAATGATTCAATGTATGATGAAGTTTATGTGTAAATCCTTGGTAATGCTAGAATTCTGGGAGCCCAGAAGGGTTGAAAGAGAAATGAAACTTGCGTGAGTCCCATTATTTTACGCATGTATGTGCAGATACGTTCTACCCACACGTGTGCGTGCACATGGCTGTGTGCGTGCACCAAAGATGGACTGCTTTCCATGTGTCCTTTTGACTTTCTGCACGTGTCACTGCGGTGCAGTCTCTTAGCAGACTTCAGGCCCAAACTGTATTCTTCACTCAGGCAAAATTGAAAAGTGGAATAATTCTAAATTACTTCTAGGTTATACTTTTACCTCCCTGAAATTGTAGTTGTCACTTGGAGGGCAAAATATTTATTGAAATAAAATTTTCTGTTAAAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130559:ENST00000389532:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=FE(30.0=100)
A:
NA
C2:
PF086836=CAMSAP_CKK=PD(67.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development