MmuINT0038292 @ mm10
Intron Retention
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84973863-84979521:+
Coord C1 exon
chr4:84973863-84974025
Coord A exon
chr4:84974026-84979323
Coord C2 exon
chr4:84979324-84979521
Length
5298 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
TTTTTGCTCATTTTCAACAGCTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
Seq A exon
GTACGCTGCTGTGTCACTGTGAAAATGTGAAGTTCTATGGATGAACTTAGGAAGACAGACTCAAGCTTTGAGAAATTTTCTATCTTTTTTTTACATGGTTTTTAACTTGTTAATATTTAAGTTTTTGTGAGCTTTCTATGGTAAAATTTAAAAAGTTGAAAATACAGACATAAAAGCAACTTGTAATCAGAACTTTTATTTCTTCTATGAAACATCTAGGTACAATAGTACTCGTATTATAAGAAATAATTGGATCAAGTGTGATCCTGATGTGTGACCTAAGGTACCTATGAAATCCACATCGTTTTATTGGTGAATGTGCTCAGACACTAAGGCGACAATGATGTGGTCTTCACAGGCATTCCTTTTCAATGATTTCCCTCTTTCTTTCTGAGTTTCTTGTTAGTAGTTGCTGTACTCTAGTTGATTCAGGATCCTGCAGCAAGGCTCACGTGTCTCTTTAGCTATGCCAACAGACATCATGAGAGTTATGTTCCTCTATAATAGCTGAGACTAGGTGAGGTTGGAGGAGGTTAAAGATGGTTTTTTGTTTTTTTATCCCCCAGTTCTGGGGGCAGCAGGTGGTAGGTGGAGCTTGTGGGTGTTCTTTACCCAGTGCAGTAGCTGATGCTGTGTGCAGGTGGGCTAGGCTGATGGGTGCAAGTATGTAGTCAGCTTCAAAGCTGTCTTTGTTGAGAGGCTTCTGTATGCTTATAGGGAGTCAGTGCTCGTCCCAGGAGATTTTTCTGGGCCCAGCAGGTTCTCAGTTACTCTAGAGGCCTGTGAATTTGTATTCCTAGTGATAGCAGATGTCTAGGTTCAGTGCTATCCTCCAATGCATTAGGGAGTATGTGTCAGGGAACAGAGACTGAGTTGTGCATTGGATGTGGAGGACCAAGGGAAGCAAGCATTATTCCTGCTGCTTTGAGCACTCTCAGACCCTGTTCAGCAAGCTTCCTCAGGTGAGGGAGGAAGCTGGGACAACCCAGTGCTCTGCCAGACCAGGGCTCAGAGTTCCAAAACCTGCTTGGAAGCAACCCACACATGTCAGACGTGTGGCTTCATAGGCTGAGCAGGTTAGAGCCGCAGATTCACAGCTCTCAGCCTTCACAGGCAATGAGCATGTTCCTTGTCACAAAGAATGGGACCACTACCATCACAAAGTGATCTCATGCCTTAGTTATAAATTTGTATTGTTAACTTTTTTCATACAATGTATTTTGATCATATTTTCTCTTCACTCCCCAAGTTCCCCCAGATCCGTTCTACCTCCCTACTCAACCAAGTGTTCTATTTTCTCCTTCCTCAAAAAAAAAAAAAAAAAAGAACCAAGAAAATGAAACAAGACAAAAACAAAACGATAAACAAAAAAGCACATTTTAAAAAGGCATGAAGTTCATTTTGTGTTGGTCACCTACTCCTGATCTTGAGGCCTACCTTGGAGGGTGCTTGTCATTTCAGTGGAGAAAACTGATTTTCAGTTTCCCAGCAGGTATCAGTTATCAGCAGCTTATTGGTTAGGAGTGGGACTTTGTGTCACTTCCCCTTATCCTTGCAGGGATTTTCCTCTGAATTGAATGTGTGTGGTCCTTGTACATGCATCACCGTGCATTGTGTCTGTAGGGTGCTGTTTCCATAGAGCCATCCCCTCCCTCTGGATCTGACAGTCTTTCTCCTCTTCCTTAAACATTCAGAGAGGGATGTGAAACAGACAGAGAGAGTCGAATGCTCTAAGATCTCTTATTGTAAGCATATGTACTTGTGGGTCTCTGTGTTAATCATTATCTACTGCAAGAAGCTTCTCTGATCAGGGTTGAGTGTTACCCTCTTCGATGGGGACAACAATATGGCATTAGTCATTCTTTTATTATTATGCTCACTTAGTAGAAGAAGAATAGGTTTTTCCTCCAGCACTTTGACATATCTATTCTCAGGTTCTTGGCCTCATTAACAGTGTCAGGTGTTGGTTATATCTCATGGACTGGGCTTTAAATCTAAGAAATTAAGAAGTGTGGTTGGTTACTGCTGTGCCCTTAGTGCTGTTGCTGCTCCAGTGTATCCTGCAGGTGGGTTGCTATGGTGGCTCACAGTATTTGTAGCTGGGTGAGATTGATGCTTTCTTAGAGAGTGTTCACTGTACCTTGCAGCACTATGAACACTAGTCAGTAGGGGTGAAGCCTCTCTTGAGCACTAGGGCCTTACTGCCAGGCTGTGGAGGGTAAATGACAGCGTGGGCAATGGTATGTGATAATTGGTGGTGTGTGTGTTGAGGGGGAGGCAGCTATGGAACCCCGTTGGCAAATTATTCAACAATATAGAACTCATTCTGAGCCTGAATATTTTATTTGGTACATATAGTGCAAAGTTGGGGCATTCTCTCCTCATTATATGGTAAGCTCATTCGGATGCCTTTTATATATTTTAGAAAGCTAAAGTAGTTTTCATATGGATTTCCAAGAGACCTTCATTATTTGTTATCCCTCCCCATTACTTTCTTCACCCTCCTACTCTTCATTTATTCCTCCTATTATAATTTCCTCTTTGTCTATTTGTAACACTATATTCTGTTTCCATTTCTTTGGAAAAATCACTTCTACTCTGTCCCTCAGCCCCTTCTGAGCTACCTAACCTCTGTGAATATTCAAAACGAAGCACACATGCCTAAGGTTAACATTTATCATTCCCATATAACAGAAATCGTGCTGGGCCGTTCACTCTGAGTCGGTGTTAACTCTCTCAGGATGACTGTTTGTAGCTCCATTATTTACCTGAAAATTTTATATTTTTCTTAAGAACTGAATAATATTCCATTGTATGAGTATACCACATTTTCAGTATTCATTTGTCAGTTGATGGAGATTGAGGCTGCTTTCAGCTTCTAATTATTGTAAACAGAGAACAGCAGCGGACTTGGATGAACAAGCATATCTGTAATAGGATGCAGAGACCTTTCAGTATGTGCTCAATCACGAGCGGCATGGGTGGATTCTGAGATAGATCTCGTCCCCGCTTCCTGAGGAACTACCTCACTTATGCCAAGTGGCTGTATAGGTTTGTACTCCTTTCAGAAATGAGCTAAGTGCTTCCCCTTTCCTGACTCCTTGCCAGCATCTGCTGTCATTTGTTTGGTTAATCCTAGCCATTCTGACTAGGGTAAGAACTCTCAAAGTAGTTGTAATTTGCAAGGAAATGTTGAACATTACTTTGTTTTTTCAGCATTTTATCCCTTAACTTGAAACCTCTCTTTTTAGTTCTATACCGCATTTTTTTATTGGGTTGTTTTCTTGGTGTTCAAATGTTCAGTTCCTCTGTGCTCCTCTCTGTGGCACTGCCCCTTTGGCCATCCCCCACAGAGACACTGACTCTGTCACTGGTGACTGGTATGTATTTCCAGGTTTCTAGGAAAGTTCAGTCTTCCTCAATAGGTCTCTCTCACAATATAACACGGCTGTAGCTCTAAGATAAAGGATGTGGTTATATCCTGTGGTTATATAGGTTATATGTGGTTGTATCCATCATCTGGGTTCAGCCCTTTCAAAATCTCCCCTTCTGCTCTCTTTGCCCACTGTCCATCCCTAAAACCCCTCATCCCTTCACCCCAGCTGGCTTCCACCTTTGTCTCTCTGTTTGTCCTGAAACTATCGTCTTAGTTTCTGCTGTTCTTCCTTTTCTCCTTGAAGAATGTTCTCTTTTTACTCTGGTTCTTTTTACATCATTCATGAGGCAGCACAGAGAAAACTGCTATACTGCTGTCTTATCCCAGAAACCAAACAACGGTTGAGCATGTATTTCTTTTTATGCCAGAATCATGCAATAGTATTTAATCCCAAGCAGGTTTTTGGACTATTAACAGAAATAAAGAAACATGTTGTAACAACAACATGAAGCAAGTAAACAACAACAACAACCAACAACAGCAACAAAGGCTCTTCTAAAAGGAGCAGCAAGAAATTTTGATTGCTAGCAGAGGAAACTCTTAACTCAGAATGCCACAACCAATATAGATTAATGAATTTATAATATTAACTAATTTACTCAATTGTGAATAATTTTGGGTATTTACTTGTGCACAGAGAGTAAGGTAAGCACTCTTTCATGGAGCTGGAATATTTAAACTTCTTGCAAGTTCTTCTATGGAAATAAACACACTATTGCCCTGATGCTTCAGCACTGAAAGTCTATCATAAAGATAGACTTAAACTGTGTCCTCCTGTTTGCTGGAATTAAATGTGAATAGGGAGCTCTCCCAGCATCCACTACTCTTTATTTACTTATTTACTATTGAAAATAGGTTCTTCTCTCATATATACTTGACCACAGCTTCCTTTCTCTCCACTCCTGCCACCTCCCTTATTACAAAGGACTTTTTCTCCTCCATTTCCCTTCAGAAAAAGCAGTCCTCCAAGGCATGACAGCTAAATAGGAAACAAGATATACAGGTTGGACAAGGTAACCCAGTAGGAGACAAAAAGACCCCAAGAGTAGGCAAAGATGTCAGAGACCCACCTGCTCCCATTGTTAGGTCTCTAAACACCAAGCTATCAGCCTAACATATGCATAGTAGAGGACCTGGTACAGAGCCATGCAGGGCCCATGCTTGCTGTTTCAGTCTCTGTGAGCCCTACTTATTTGATTCTTGATGTCTTCCATCCCCACTGACTCCTATAATCATTCCTCCCCTGCTTCCATGGATTCCCTGAGCTGCAAGGAGAGTGATACAATGGAGACCTTCAACTGAGCCTCTTTCTCTGCATAGTGTCTGGCTGTGGGTCTCTCTACCTGCTTCTATCTGCTGCTGGAGGGAGCCTCTCTAATGACAACTGAAAAAAGGCACTGATCTATGAATATAGCAGAATATCATTAGGATCCCCACCATTGATCCTTGAAGTCTATTGAGTTTTCTACCCTAAGTCTCTGGGATATCCAGTTTCTGGTCACTGACCATCCAGGCAGTGTTAGACAGGACGGTTGTAGGTTGAGGGTTTCATAGCTGAGTTGGTATCCAGGTTTTTATTTTTAGTACCCTGCAGAGTATCTTCCCATGCCAAAGATACCAGAATGCAGGGATGAAAGCACCTGCTCAACCTCTCTTCTCATGAGTTATCCTGGCCAATAACACGTTGTACATTTTGAATGTCAGATACAGTTTTATGTTGATATCTAACTATATCACTTGTACATTGTGTCTAGTTGTTAGGTGTTAATATAACTTAAGAGCAGGTATATGTCCATATATATGTAACTATATATGCACATGCTTGCCTTATTGATTATATCATTTTTGCTCATTTTCAACAG
Seq C2 exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070:ENSMUST00000047023:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types