MmuINT0038292 @ mm9
Intron Retention
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84619767-84625425:+
Coord C1 exon
chr4:84619767-84619929
Coord A exon
chr4:84619930-84625227
Coord C2 exon
chr4:84625228-84625425
Length
5298 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
TTTTTGCTCATTTTCAACAGCTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
Seq A exon
GTACGCTGCTGTGTCACTGTGAAAATGTGAAGTTCTATGGATGAACTTAGGAAGACAGACTCAAGCTTTGAGAAATTTTCTATCTTTTTTTTACATGGTTTTTAACTTGTTAATATTTAAGTTTTTGTGAGCTTTCTATGGTAAAATTTAAAAAGTTGAAAATACAGACATAAAAGCAACTTGTAATCAGAACTTTTATTTCTTCTATGAAACATCTAGGTACAATAGTACTCGTATTATAAGAAATAATTGGATCAAGTGTGATCCTGATGTGTGACCTAAGGTACCTATGAAATCCACATCGTTTTATTGGTGAATGTGCTCAGACACTAAGGCGACAATGATGTGGTCTTCACAGGCATTCCTTTTCAATGATTTCCCTCTTTCTTTCTGAGTTTCTTGTTAGTAGTTGCTGTACTCTAGTTGATTCAGGATCCTGCAGCAAGGCTCACGTGTCTCTTTAGCTATGCCAACAGACATCATGAGAGTTATGTTCCTCTATAATAGCTGAGACTAGGTGAGGTTGGAGGAGGTTAAAGATGGTTTTTTGTTTTTTTATCCCCCAGTTCTGGGGGCAGCAGGTGGTAGGTGGAGCTTGTGGGTGTTCTTTACCCAGTGCAGTAGCTGATGCTGTGTGCAGGTGGGCTAGGCTGATGGGTGCAAGTATGTAGTCAGCTTCAAAGCTGTCTTTGTTGAGAGGCTTCTGTATGCTTATAGGGAGTCAGTGCTCGTCCCAGGAGATTTTTCTGGGCCCAGCAGGTTCTCAGTTACTCTAGAGGCCTGTGAATTTGTATTCCTAGTGATAGCAGATGTCTAGGTTCAGTGCTATCCTCCAATGCATTAGGGAGTATGTGTCAGGGAACAGAGACTGAGTTGTGCATTGGATGTGGAGGACCAAGGGAAGCAAGCATTATTCCTGCTGCTTTGAGCACTCTCAGACCCTGTTCAGCAAGCTTCCTCAGGTGAGGGAGGAAGCTGGGACAACCCAGTGCTCTGCCAGACCAGGGCTCAGAGTTCCAAAACCTGCTTGGAAGCAACCCACACATGTCAGACGTGTGGCTTCATAGGCTGAGCAGGTTAGAGCCGCAGATTCACAGCTCTCAGCCTTCACAGGCAATGAGCATGTTCCTTGTCACAAAGAATGGGACCACTACCATCACAAAGTGATCTCATGCCTTAGTTATAAATTTGTATTGTTAACTTTTTTCATACAATGTATTTTGATCATATTTTCTCTTCACTCCCCAAGTTCCCCCAGATCCGTTCTACCTCCCTACTCAACCAAGTGTTCTATTTTCTCCTTCCTCAAAAAAAAAAAAAAAAAAGAACCAAGAAAATGAAACAAGACAAAAACAAAACGATAAACAAAAAAGCACATTTTAAAAAGGCATGAAGTTCATTTTGTGTTGGTCACCTACTCCTGATCTTGAGGCCTACCTTGGAGGGTGCTTGTCATTTCAGTGGAGAAAACTGATTTTCAGTTTCCCAGCAGGTATCAGTTATCAGCAGCTTATTGGTTAGGAGTGGGACTTTGTGTCACTTCCCCTTATCCTTGCAGGGATTTTCCTCTGAATTGAATGTGTGTGGTCCTTGTACATGCATCACCGTGCATTGTGTCTGTAGGGTGCTGTTTCCATAGAGCCATCCCCTCCCTCTGGATCTGACAGTCTTTCTCCTCTTCCTTAAACATTCAGAGAGGGATGTGAAACAGACAGAGAGAGTCGAATGCTCTAAGATCTCTTATTGTAAGCATATGTACTTGTGGGTCTCTGTGTTAATCATTATCTACTGCAAGAAGCTTCTCTGATCAGGGTTGAGTGTTACCCTCTTCGATGGGGACAACAATATGGCATTAGTCATTCTTTTATTATTATGCTCACTTAGTAGAAGAAGAATAGGTTTTTCCTCCAGCACTTTGACATATCTATTCTCAGGTTCTTGGCCTCATTAACAGTGTCAGGTGTTGGTTATATCTCATGGACTGGGCTTTAAATCTAAGAAATTAAGAAGTGTGGTTGGTTACTGCTGTGCCCTTAGTGCTGTTGCTGCTCCAGTGTATCCTGCAGGTGGGTTGCTATGGTGGCTCACAGTATTTGTAGCTGGGTGAGATTGATGCTTTCTTAGAGAGTGTTCACTGTACCTTGCAGCACTATGAACACTAGTCAGTAGGGGTGAAGCCTCTCTTGAGCACTAGGGCCTTACTGCCAGGCTGTGGAGGGTAAATGACAGCGTGGGCAATGGTATGTGATAATTGGTGGTGTGTGTGTTGAGGGGGAGGCAGCTATGGAACCCCGTTGGCAAATTATTCAACAATATAGAACTCATTCTGAGCCTGAATATTTTATTTGGTACATATAGTGCAAAGTTGGGGCATTCTCTCCTCATTATATGGTAAGCTCATTCGGATGCCTTTTATATATTTTAGAAAGCTAAAGTAGTTTTCATATGGATTTCCAAGAGACCTTCATTATTTGTTATCCCTCCCCATTACTTTCTTCACCCTCCTACTCTTCATTTATTCCTCCTATTATAATTTCCTCTTTGTCTATTTGTAACACTATATTCTGTTTCCATTTCTTTGGAAAAATCACTTCTACTCTGTCCCTCAGCCCCTTCTGAGCTACCTAACCTCTGTGAATATTCAAAACGAAGCACACATGCCTAAGGTTAACATTTATCATTCCCATATAACAGAAATCGTGCTGGGCCGTTCACTCTGAGTCGGTGTTAACTCTCTCAGGATGACTGTTTGTAGCTCCATTATTTACCTGAAAATTTTATATTTTTCTTAAGAACTGAATAATATTCCATTGTATGAGTATACCACATTTTCAGTATTCATTTGTCAGTTGATGGAGATTGAGGCTGCTTTCAGCTTCTAATTATTGTAAACAGAGAACAGCAGCGGACTTGGATGAACAAGCATATCTGTAATAGGATGCAGAGACCTTTCAGTATGTGCTCAATCACGAGCGGCATGGGTGGATTCTGAGATAGATCTCGTCCCCGCTTCCTGAGGAACTACCTCACTTATGCCAAGTGGCTGTATAGGTTTGTACTCCTTTCAGAAATGAGCTAAGTGCTTCCCCTTTCCTGACTCCTTGCCAGCATCTGCTGTCATTTGTTTGGTTAATCCTAGCCATTCTGACTAGGGTAAGAACTCTCAAAGTAGTTGTAATTTGCAAGGAAATGTTGAACATTACTTTGTTTTTTCAGCATTTTATCCCTTAACTTGAAACCTCTCTTTTTAGTTCTATACCGCATTTTTTTATTGGGTTGTTTTCTTGGTGTTCAAATGTTCAGTTCCTCTGTGCTCCTCTCTGTGGCACTGCCCCTTTGGCCATCCCCCACAGAGACACTGACTCTGTCACTGGTGACTGGTATGTATTTCCAGGTTTCTAGGAAAGTTCAGTCTTCCTCAATAGGTCTCTCTCACAATATAACACGGCTGTAGCTCTAAGATAAAGGATGTGGTTATATCCTGTGGTTATATAGGTTATATGTGGTTGTATCCATCATCTGGGTTCAGCCCTTTCAAAATCTCCCCTTCTGCTCTCTTTGCCCACTGTCCATCCCTAAAACCCCTCATCCCTTCACCCCAGCTGGCTTCCACCTTTGTCTCTCTGTTTGTCCTGAAACTATCGTCTTAGTTTCTGCTGTTCTTCCTTTTCTCCTTGAAGAATGTTCTCTTTTTACTCTGGTTCTTTTTACATCATTCATGAGGCAGCACAGAGAAAACTGCTATACTGCTGTCTTATCCCAGAAACCAAACAACGGTTGAGCATGTATTTCTTTTTATGCCAGAATCATGCAATAGTATTTAATCCCAAGCAGGTTTTTGGACTATTAACAGAAATAAAGAAACATGTTGTAACAACAACATGAAGCAAGTAAACAACAACAACAACCAACAACAGCAACAAAGGCTCTTCTAAAAGGAGCAGCAAGAAATTTTGATTGCTAGCAGAGGAAACTCTTAACTCAGAATGCCACAACCAATATAGATTAATGAATTTATAATATTAACTAATTTACTCAATTGTGAATAATTTTGGGTATTTACTTGTGCACAGAGAGTAAGGTAAGCACTCTTTCATGGAGCTGGAATATTTAAACTTCTTGCAAGTTCTTCTATGGAAATAAACACACTATTGCCCTGATGCTTCAGCACTGAAAGTCTATCATAAAGATAGACTTAAACTGTGTCCTCCTGTTTGCTGGAATTAAATGTGAATAGGGAGCTCTCCCAGCATCCACTACTCTTTATTTACTTATTTACTATTGAAAATAGGTTCTTCTCTCATATATACTTGACCACAGCTTCCTTTCTCTCCACTCCTGCCACCTCCCTTATTACAAAGGACTTTTTCTCCTCCATTTCCCTTCAGAAAAAGCAGTCCTCCAAGGCATGACAGCTAAATAGGAAACAAGATATACAGGTTGGACAAGGTAACCCAGTAGGAGACAAAAAGACCCCAAGAGTAGGCAAAGATGTCAGAGACCCACCTGCTCCCATTGTTAGGTCTCTAAACACCAAGCTATCAGCCTAACATATGCATAGTAGAGGACCTGGTACAGAGCCATGCAGGGCCCATGCTTGCTGTTTCAGTCTCTGTGAGCCCTACTTATTTGATTCTTGATGTCTTCCATCCCCACTGACTCCTATAATCATTCCTCCCCTGCTTCCATGGATTCCCTGAGCTGCAAGGAGAGTGATACAATGGAGACCTTCAACTGAGCCTCTTTCTCTGCATAGTGTCTGGCTGTGGGTCTCTCTACCTGCTTCTATCTGCTGCTGGAGGGAGCCTCTCTAATGACAACTGAAAAAAGGCACTGATCTATGAATATAGCAGAATATCATTAGGATCCCCACCATTGATCCTTGAAGTCTATTGAGTTTTCTACCCTAAGTCTCTGGGATATCCAGTTTCTGGTCACTGACCATCCAGGCAGTGTTAGACAGGACGGTTGTAGGTTGAGGGTTTCATAGCTGAGTTGGTATCCAGGTTTTTATTTTTAGTACCCTGCAGAGTATCTTCCCATGCCAAAGATACCAGAATGCAGGGATGAAAGCACCTGCTCAACCTCTCTTCTCATGAGTTATCCTGGCCAATAACACGTTGTACATTTTGAATGTCAGATACAGTTTTATGTTGATATCTAACTATATCACTTGTACATTGTGTCTAGTTGTTAGGTGTTAATATAACTTAAGAGCAGGTATATGTCCATATATATGTAACTATATATGCACATGCTTGCCTTATTGATTATATCATTTTTGCTCATTTTCAACAG
Seq C2 exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-Cntln:NM_175275:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: