MmuINT0042030 @ mm10
Intron Retention
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:139314571-139323366:-
Coord C1 exon
chr1:139323227-139323366
Coord A exon
chr1:139314754-139323226
Coord C2 exon
chr1:139314571-139314753
Length
8473 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCTAAACTTTTATCCTGCAGGAT
3' ss Score
9.95
Exon sequences
Seq C1 exon
TTACCACTGTGACTGCACAGGTAGTGGATTCACAGGGATGCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAACGACGCGACATGTGAAGATACTGTTGACAGCTATATTTGTCACTGCCGGCCTG
Seq A exon
GTAAGTGACAAATACTTTATCGGGTTTTTGGTTTTTGTTTGTTGGTTTTTTTTCTTCATTTTTACTGACAGTAGAAACAAGTTGCTCATAGAAAGCAAAGTGAAAATTATTGTCATTAAAGCTACTAAGCCAACACTTTCTTCAGCTTTACTCCTTGAGTGGCACTCATCATTGTCCACGTAGTATTGATATTATACTATACACTGTATAAGGCCTACAACCCCAGCACCAGTAATGACTGGACCCCTCTAAGTTCAGAAACATGACAGTGGAAGCCTGAACTCCACATAGTTTTCCTGAAGAAACATTCGCCAGGTTTGTTTTCATCATCTACCTATTTTCCAGACACCAGAAATAAATAGAAGCAATGTGTTAACCTTTTAAGAGTTGCTCTTGTAATTCATGAAGTTAGTCAAGCTTATAATTATGCTGCCCAGACAATGTTATCAAATGCTTCCCCCAATATATAAAGGATACAATGGGCATTCTTATAAGATCAACAAGAATATAGGTTAAGCACATAAAAAAAAAAAACCTAGAGAAATAAACATATACCTAGAGAGTAGAGATGTTACAAGAACCATCATAAAGCAGATGGTAGTACTTGAGAAATATTTTTTGATACCCTCCCTCCAATTACTGAGAAATATTATTGGTAAGTGGAAAATATTTTATTTATTCTGGACAACAACTTAATGTGTTTTTAAATTTAATTTTCTTAATAAGATTTTGTTAATAGAAATGGCAACTATAGTATTTTCCCTCTGTTCTCTTTTAATCCACTAAGAAATATTGAAAGCTTATGAATACTCCATATTGTATAAAATAGACTAACTGTGTATCTAACACTGTTTCTACTGATTTTTTTATTCTTGTAAAAAAAAGAAAAGAGTTAACCCTGTATTGGAAAGCAGTCATGAGATGAGCCAATCCAGTTAGTAATAGCCTCTGGTTAAGAAATGTTTATTGTCTAGGGAATATTGAATAATACTTTTGATCAATGAACAAAAAGGAGTTTTGAATTCCCTGGTTTGCAAATTTCAGTATGCTATGTTTTCCTGTTTCAAAAAATGAATAGGAGATACCTGCTGTCCTCTGGTCATTGTTATGTTATCAAATACTGGTTTAATAAAAAACTATATCATTCTGTATTCTCATCACAATAAATTCAGTGTGAATGACACATTTAAAAGTATCTGGGAGCCAAAAGGGCATATGTAATTCTGACAGTAGTATAGTATGCTAAAATAGAAGTTGGGTACATTAAGGAGTTATCATGAAATTATATTAAAGAAAATATTACCATTTAGAAAATATGATTGAACATATATCATAAATGGACTCACTGACTCAAAGACTTTGAACAAGTTACACAGCTACTTTTCAGACTGATAGTTCACTCATTAAAAAGGCATTGACAATAGTGTTCACCCCCTTGAGTTGTTTTAGAAAAAAAAACAAAATCCAGTAATGAAATGTACGAATCTTAGCTCCGCTTAGAACATAGAGATCATTCAACAAACACTAACTAGTTAGTAAAATGGGATTGATCACTCTATGCCATATGATTAGCATCAAGCAGCATGCTATTTATTTTAGGAAGGAAGTGAGGGAGGGAAGGGGGAATGGAAAGGAAGAAATGTTGTAGGTGCACATTGAAGGGGCCTTGTCCCACCATAGAACTTTGGGTGGCTGTTGAAGACCATTTGACTGTGTTGGCTGGTGGTGGGGAAGTGAGGATGGGGAGAACAGCAGCCAGAGCTCAGAGACACTTGTGTACACTGCAAACATGGGTCAGGGGAGTCACATACCCTGACCTATTGATTTACAAAGAGTTCTCTTACTGCTTAGTGTAAGCTAGTTGAGTGAAATAAAACTAAGGAAGTGAGAGATTTTTATTTTTTTAAATATTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCGTGTCCAATGGGCCTTTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTAGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGGTAGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGTGTCCATTATTTCTAACATTTAGTCCTTTCCACTACAGGTTTCTGCCACCTCTGAGTGAGCCCCCCCCCAAGCCTTCCCTATTGTCATAGTCTCTAGGATACAAAACTATTTGTTTATATGTTATGGTATTTTTTTTAATCACATCTATGAAAAAATACCTAACAGTGGCCAGAAGAGTCATGTAAGAGGTACACTACATGGGTATATTTAGCACTAATCCAAATCCGGGTATCTGTCTGAGATCACTGTGTGGATGGTGTGTTACCCTAGGTAGAAAAGTAAGGATGCCTTTGTACCCTTGCTCGCTGTTGTATATAATGAGATTCAGTGCTACAAACCTTTTTATAAGTAGGAAAAAAAAAAAAAAACAAACTATTGCTCTGATGGTAAAAACAGTCCTAAAGAACACGTTGGCAGAAATCACGGCTGCATTTGTCTAAAGTCCTTATTTCAAAAGTAAATAATTTTTTAGAAGTATCTCAAAACTTTATCACAGATGCTCAGATGGAATTGAATATGAAACAAAACAAAGCAAAACAAAACAAACAAACAATCCACATGCCCAGAGGATCTGATCCAGTCTCGTGGTGTTTCTTTGTACAGAGATTTATAGGGAAACTTGTTAAAAATATTGACTGCGGTCTTGACTGAAGGAGTCTATTTATATCTGGTTAAAGAGAACAGCAACTAAAATTCCCTCCAGAGCCTCGGTGGTGTGGACAGAACCGGCAAACACATAAATCAGGACTTCCCCCATGTTCCCTATTGAATGAGATAATGCACGAGCCGGAAAAGCAGGGAAGGATTTATTATAGTTCTAAATCTCTTCCTAACCTGCCTGGTGTGTGAGTCTGGAGTCTTAGAACAAAAAGAAAACTACAAGCAGCCTGTGCATCTTTCTTTCTTAATTTATCTCTCTCTCTCTTTCTTTTCTTCCTTCTTTCCTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCCTTTCTTTCTCTCTCTCCCTCTTTCTCTTCCTTCCTTCTCTCTCTCTCTCCCTCTCTCTTTCTCTTCCTTCCTTCCTTCCTTCCTTCCTCCGTTCCTTCCTTCCTTTTTAAAGAAAGTCCACTATATCAAACAAATCCTGACACAGAGCAACCTACTGTGAAGACTATTGTTTAGTAGTAGTTTATAAGTATGTAAGTATGAAGTGAAAGTGTTTTAAAAGCAGGCACTCTCATTGAAGACACACGAAGGGTTCTTTGGGGAGCGCACCATAAAGAACTGTGAGAGCTCTATCTGACCTGTTTCTTAGTTCCTTTATCCAATGCTTGAGTTTCTTCTTCAGATTGTTGAGAAAGGCCCCATGGGTTACATAAAATAAATATATTATACTATGGTGAAAGAAGATTTATGCTGTAGTTATTATTTGAAATAGGATCCACTCAAGAGTTTATTAGGGTTACAAAATGAGCAATCATATTGTTTTCTCATTACTGGCTCATTAATAGTTAATTCTCTAGTTATGCACTGAGCAGGTTTTAATTCAGTTGTTGTCATTTTAACCATTAATTAGTACTATTTATTCTCACTCAGCCATTGATTGAAGGTCAACTATTTATGTATTGCTGGGTAGTGAAGTGTTGAATAAAATACACACAGCCCTATTTATGTGGAGCTGACAATCTGTTGAAGCAGGCAACTATACACGCAAATAAACACATCATTAAAAGTTGTCAAAAGAGCAATGGAAGAAAAAGACTGAGAAAACTGACAGGAAACCAAGGCATTCTATTGTGTTGTGATCCGAGTAAGAGAGAAAAGTAACGTGAGGCAAAGTCTGAAAACTGAGGAAGAGTTGGCCAAGAAAAGGCTTGGAAGGGAATTTCCCAGGAGGAGAGAGAGCAGTTGTTAAGTCTGTGGGTAGGAAGCATCCTCAGGGAGAGTGGGAAGAGCGGACCGGGGTGGAAAGAACCCATCCAAGGGAGCTCTTAGGTTATATTAAGGATGTTATCCTATGTGAAAACAGGAAACAATGTTTATTATTTTAAACTAAAAAAAAAAGGCTATGGTTTGATCTCCAAGTTTTGTGAGTTAGGGCTATGAATTTTACCTTAACAATAAGTTTCTCGGTGAACTTAAGTCAACATTCCAGACGTTATTGGGCTGTAGGTCTGTGTCCCTTGAAAGACTCCCTGCATTTGTTGTACCGGCTTACAGAGTAACTGATGCTATTCAGTGTCCACCATCATAATGTCAGTATCCTGATTCATTTATATTTGGGGGTTCACACTACGCACAGCACAAGCAAACAAGATAATCCTCGTAATGGATAAAACATGAAAATGATAGAAAACATTTTGGGGACCAAATCTATTAACCTTGGTAGTAACTAGGGAAAATAACTAAAACAACAAAAGATCCGAGGTGATTTGGTGACAGCAAATATCCAATAAGTATTTAGATCTACTTGTGGGTGATATGACAGTGGTGCTGCCTTGGTGGCATCTGTCAATCTTGGCTACAATGACAAACATGTATAACCTAAAACACAGAAGCTCCACTTTCAGGCTTCAACTTCAAGGTTTTACCAAGACACACACTATTTCACTGTATACCTTGTTTCAACCTGTAAATGAATGCTTACACAGTCACACATTTTGGGACTCCTAGTGATGACGTATGAGTTAGATCTGTCATAGGAACTTAGAGTGAACAGGGAGTAAACACAGTAAGTCGTGAAAGGTAACATGGGAAACAATTCATTTATATTAAAGCCCGTCCTACACACTATAACCATATTTTTATAGATAGATGTGTGTAAAGACATGGAAGCAGATTGCACAGGGAAATTTTTTTGTGTTTGATATCTTAGTTTCTTATAAAATGGTAAGCCATTTATTTTTAAATTCTTAGCTGTAATTAAATTACCTAGCTAAATCTAGGAAGGTATAAAATAATCTACTTCTGCATGCTGGGTGGTAACGTTGACCTTACTCTGACCTTTAAGGGAAATCTTAGAGTTTCTATTGGTATGATGGCACAACATGACCAAGGCAGCTTAGGGAATAAAGGGTTTATTTTGTTTATATTTCCACATCTAGTTCATCACTAAAGTGACAATCTCTAACAGGGCACCAAACTGGAGGCAGAACCCATGGTGGAAAACTGCTTACTAGCCTGTTCCATCCTCAATGATGTATCTAGCTTGCAGCAAATTGACATAAATAGTTTTATGTCAGCACAAACTGACCTCTTGTCAGCTTGACATACATTCATGTCACTTGCTAAGAACCAGTCTCAGCTTGGAGAAGGGTTCTAAAACAAGGGGCATTTGAGAGCAGCGAAACAAACAACTCAAAGTCAAATCAAGTGTTACCAGCTGATGGCTGTGTTCTGCTTGAACACTGCTTCCCGAGTGTTCTCTCTGTGTTCTCCTTTCTCTGGAGATCCCCAGCTAGCTCTTTGCTTCAGACAGCATTTTTGCAAATCTAAAACCTCTCTGGATTACTCGTTTCTTGCAGATCAAAAGCCCAGTCTTTTATTTACATAGCAACTCAGTCTTTATTCCAGGTTCCTTTTTGATTACTCCATGAATCAACACCCCATGACACCAGCTCCTTGATTCTTAGAGAGAGCAAGTATAAGCACAGACAATAAGATAGCTGGGTGGGAGCCTGTCCTGAAATTACCATTCCTACCATGTCTGGGCCTGGACCTACATTCCCTCTGTTCTAGGTTGACCTTGAATTCAGAAATCTGCCAGCCTTTTGTCTGCCTGTCTTTGTATCTTTATGACAAGTTGGCTCATAGTGCAGCTGCCTCTGTTCCTTTAGATCTGTGAAGCAGCTCCTTATAAATTCATATTGTATCCTTATATTTTGCACAGTTGGGAAGTTATATATTTTCAAACTCATGTTCTCAGCGTTCTTTCTCACGGCTTTAAGGGGTGTCCTGAAGGTCACAGCATTCTCCATTTTGCTGAGACATAGTGTCTTCACCTCCTGGTCTCTTGCTGTCTCTAATTATTATAGTGTCATTAACCTTGACAGAGAGGACATTCCTCAAAGGAGGAGTGTGAAAATATGTACATTATTATAAAACAAACCTTTCATCCACAGCGACCAGCTACACTTGTGGAGGCCCACTCTCTGCTGGCTCTATTCAAGGGGAACAAGCGGTGTCATAACGTCCCTTATATATGGTCAAGCAGGACATGGCAATCACTGTTGAGTTGTAACTTTGCCTTCCTTGTTCATCCCCAAGATCACACCTTAGTATAAACACAATGTGAAACATTTTTACAAATGTAAAAAGTCCTACAGTCTCTTTTAAAATCTAAATTCACTCAAGTGTTTGTTCCTATAAAATTAAAACAAATTAAGTTAAATACTTTCCTATTTCAAGAGGTAAGAATAAGTGAATAGTCACAATAATACCAAAGCAAGACAATACAAATCACTCAATATTTAGTATCTGGGATGTGCTCATGATTTTCTGGGCTTCTTCAAAGGGCTGCAACTTCTTTGGCTCTACCCTCTGCAAAACACACAGAATATGTCCTAGGCTCCTGCTGGCTCCACTCCATACCTGCTGCTATCCTTGGTGGCTATCCAAGAATTGACAACTCTAAAATGCTGGGGTCCTTCGCTGCAACTGTGAAGTACTCTCACCAATACCCTCTCCTGGGCTTTCCTTCAAGGATACCATCCCTGAGACATGGTGCCAAAACTCAGCTGCTCTCCATGACCCCTTCATGCCTTCAAAACCAGTACCACTTGGGTGACCCTTACGCTACCAAATTAGGCTCCAGGCATAAAGTATAACCTTGGTCAGCTCTGAAACACAACTTGAATGTGTTGACTCTAAGGAAATAAATACTTCTCAGAAGATTCCACTTCAATACTGCTGGTCTCTTGTTTAATCTATATATATATATATATATATATATATATATACACATACATATACACACACACACACACACACACATATATCAAAGATTTTACTTCAGTTGTTCTGGTATCTTGTTAACCACAGCTGATTTTTCTGCCCCAGATAAACTGAACCATAGAGTCTTAACTTAAAATAGCACACAGCCACGATAGAGCCATTAAGAGACTTTCGAACTTCCTTCTGAAACTTTACAAGGCAGGCTCCAATGTGTGCATTTCTTTCAGTTCTATTATCTTCCAAACTCCCACACAACAGTCCACCAAGCTTTGAATGCCCAACAGCTTTTCGAGCCCAAAGGTCCAAAGTCTTTCCATCGTCCTCTCCAAAACAAGGTGGTCAGATCTCTGTCACAGAAATACTCCACTATACTGGTACCAATTTCTTACTCTAACCTTTAAGGGTACCTTAGGGTTTCTGATGCTGTGATAAAAATACAGTGACCAAAGCAACTTGTGGAGGGGAGGGTTTGCTTAGCTAGTACTTCCATATCTAGTCCACCAATGAAGAAAGCCAGGGCAGGAACTCAAACAGAGCAGGGACCTGGAGGTGGGAGCTGATAGCGAGGCGAGGCAGTGGAGCAGTGCTCGCTGATTTGCTTCTTCCTTGCTGATGACTCAAAAGGGACTTGGGGTTGGCTATGCGGATCCTGCTGCCTTTTCAGATATTCTCTTTAAAAGTTTCATTTTAAAAAATGATAAATTGAAGTTAATGGTTTTCCATTTTATGCAATGTTCAGATTAAATCATGCCTACCTTGAAATTCTACTATATTTCAAGCCTCATAGGTTAAACCTTTCTAAAAAAGTATTGACCAAAATCGTACATTTTTAAAAAATTTATTATGTATCCCTTATCCATTGCTACTAGAATCTGCTTCCATGTAGTATCCTGTTATTGGCTTCTCCTGCTAGCTTTTTTGAGGGTGGGCACCTTGCTAATTGGCACCGGCACAGTGGTCAGCCTCTTCTAAGACATGTGCCTGGCATTCCTGAGCTTTGACTAAGCAGCTTCTCTAAACTTTTATCCTGCAG
Seq C2 exon
GATACACAGGTGCCCTGTGTGAGACAGACATAAATGAATGCAGTAGCAACCCCTGCCAATTTTGGGGGGAATGTGTCGAGCTGTCCTCAGAGGGTCTATATGGAAACACTGCTGGCCTGCCTTCCTCCTTCAGCTATGTTGGAGCCTCGGGCTATGTGTGTATCTGTCAGCCTGGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681:ENSMUST00000059825:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(41.9=27.1),PF0000822=EGF=PU(80.6=52.1)
A:
NA
C2:
PF0000822=EGF=PD(16.1=8.1),PF126612=hEGF=PU(69.2=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types