MmuINT0044846 @ mm9
Intron Retention
Gene
ENSMUSG00000032808 | Cyp2c38
Description
cytochrome P450, family 2, subfamily c, polypeptide 38 [Source:MGI Symbol;Acc:MGI:1306819]
Coordinates
chr19:39535067-39537565:-
Coord C1 exon
chr19:39537377-39537565
Coord A exon
chr19:39535230-39537376
Coord C2 exon
chr19:39535067-39535229
Length
2147 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTTTTCTTTCCTTTTTCCAGTTC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTATGAATAAGGAGGGTTTCTATGGATCTTGTCACATTCCTGGTGCTCACTCTCTCCTCTCTCATTCTCCTCTCACTATGGAGACAGAGGTCTAGAAGAGGGAGGCTCCCTCCTGGCCCCACTCCTTTCCCGATTATTGGTAATTTCCTTCAGATTGATGTGAAGAACTTCAACCAATCCTTAACCAAT
Seq A exon
GTAAGTATTCCTTGTGCTCCTCTAATACCTTTATAACAAAGATAAATTGGAAGTTGCTTTAAAAGAAAATGTAGTCCTAGAGCCAATAATGTTATAAATGATCATAAAGTCATATATCTTGCTAAGTATTGTGTACCTCATGCCTTTTACAGCTGGCACTTGTCAGAAAGAGAGTAACAAACAAATTTTCAGTTTAGACCAGTTCATTTATTTCATTAATAAATTTAGTTACTAACATCCTGACTGAAGCTTCCCCACTCTCCTCCCAGTTGTTACCCTTCCCACTTAGTCTACTATTCACAGGAGGAAAAAAATGGAGGCAAAGTTTGAAGCAGAGACTGAAGGACTCTTCAGAGACTGCCCTACCTGGGTACCTACCCCATATATGGTCACCAAATGCATATACTATTGTGGATGCCAAGAAGTGCTTGTTGACAGGAGATTGATATGGCTGTCTACTGAGAGGCTCGGCCAGAGCCTGAAATATACATTGGTGAACCCTTACAGGCAATCATTGGACTGGATGAGTTAGAGAAAGGACTGAAGTAGGTGAAGGGATTTGCAACCCCATAGAAAGAAAAACAGTATCAACTAACCAGAGCTCCTAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGCACTCATGACTCTAGCTGCATATGTATCAGAGGATGGCCTTGATCCTGTGAAGGCTTGATGTGTCAGCATAGGGAAATGCCAGGAATGGGAGGCTGGAGTGGGTATGTGGGTGGAGTAGCATCCTCATAGAAGCAGGGGGAGGAGAGATTGAATAGGGGGTTTCTGGAGGGGAAATTTGGAAAGGAGAAAACATTTGAAATGTAAATAAAGAAAATATCCAGTAAAAGAAAAGAAAATGGGAAAAAAAGAAAAACTTGTGACTACTACTTATCTTTTAAAACAGCAGGGGTTTTTTCTTTATATTTTGTTGAAGGTCAATAGTAATATTTTTTTCAGTAAGTTAGGTAAACTTTTAGACATAAATTTTTACTGAAGCCATCTATTTGATCCTGTACCCTAGAGAAATAAATTGATGCCTAATTTAGCTAACTACCAGTGGACGTGGAATAATACAAGAAATGCAAAAGAAGAATTCAAACTTTCAGCATAACTGGTGATATTTATATCTATTTTTAGTTCATGCAAGCCTAAATCTGGAGTTCAAAATGCTGTGAGATAAGAGACCATTTTTCCAGAAAATACTGCATATGTGTGGTACACCTTCTGGAGCGCCCACTCTCTGTGTTTGTAGTAGCAGTAAACCAAATCTGGAATGATCAATAGATTCATTTGTGGTGACTTAAAACTTTACACTTCAAACCTCATATGGGCCTAACCTTATTGCTTTACTTCTGCATCATTTTTCTACTTAATTGGTATACTTGTCTATTTCTTGTGAGTACTGTATCACTATAGTTCTATAGTAAAATTTCATGTGTTATATTGTTGTACCTTGAACAGTATTTTTACTCCTTAAGAATTCGTTTACTACTCTTGGTTCATTATGGTCCCATATGATGTCCTCTCTGTAAACATGGTATCAGAAATTCGACATAAAGACTTAACTCTGTAAATTAAATTTAGTAGTGCATGTATTTTGTACCTTGTACTTTGACTTCTGTTTTGTGTTCATCTTCTGGTCAGAGTGGCCTGTAGTTGAGTTGAAGGTTTCCACCCAAGTTGTAGTCTGGATTTCTGCAGAATAAGGTGGCCTCTGGTTGAGCAGGACATTTCTGTTCAAGTTAGTAGGTTGGAGAAGGTGAGAAGGGTGAGAGGCGTGATTTCAGTTTGAGTTGATAGGCACTGAGAAAGAGAGGGCAGTCTGCAGCCATGTGATAGCCTAACTGGAGTTCTGGTGACTGGTGTCCTGTTGAATGTGTTGATGAAAAAATTCATTGTAATCTTTGCATAACAACTGCCTGAACCCTAAGCCATTACATGGTTGACTGTAGGCAATTGATAATTACCACAATGTTATATAAATAAGCTTCAGAACCATTTGAAAGTGAGGTTGCCTAACTAAAAACATTAAAATACAGAGATAATATCAGTGTGAATGAGGTTTACACTATGTAGATTAAGGTACATGTTTGCTAGTGTTTGTCTTTTCTTTCCTTTTTCCAG
Seq C2 exon
TTCTCAAAAACCTATGGCCCCGTTTTCACTCTGTATTTGGGCTCACGGCCCATTGTTGTATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGGTAGAGAAAACATCCCAATGTCTGAAAAGATTAATAATGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032808-Cyp2c38:NM_010002:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: