MmuINT0046469 @ mm9
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled homolog 2 (Drosophila) interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35582946-35583648:+
Coord C1 exon
chr2:35582946-35583033
Coord A exon
chr2:35583034-35583577
Coord C2 exon
chr2:35583578-35583648
Length
544 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
AATGCCCTCTTTGCCCACAGGAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTTGATGTCAGTGGAAGAAGAACTGAAGAAGGATCATGCAGAGATGCAAGCAGCTGTAGATTCCAAACAGAAGATCATCGATGCCCAG
Seq A exon
GTTGGGGCTCTGGCTACAGTGTTACAGAGTTTGGGGTAGTTCGAGTGTAACTAGCTTCTCTGGTATCCTTGGTTACACCTCAGTGTAAAAACCATGGACCAGGAACCAAGGTCTCTGGGCTCTGAGGATGCTAACCAGGGACTTATGGAAGTGGAGTAGGCAGGACTAGGAAGGTGAAAGAAGGCTAGGCAGAAGGGCTCTGGTCCCCAAGCCCCTTCACTCACAGCTGTGTCCCTTTCTCTGAATGCCCCAAGAATTGGCAGGTTTGGTTAGAGTGTAAGCTACATAGCCTAGGAAGGAGCTCTGGGTGTGTGACAGTGTGAGAGGAAAGGCTCTGCCTTCGAGCTCAGGTGCTATAGCTCCGCTTTAGCTTTGTATAGGTAGGAGGCAAATTATAAGGCCCCAGTCTGTGATAGCACAGAACCTGCCCAGCTACTCCACAGCTTGGGCCTAACACACTTCTCTGGCCTGTCGTGGTGCTCTCTGCTGGCTACTGCTGGCTAGAGCCCACCTCAAGCATCACTAATGCCCTCTTTGCCCACAG
Seq C2 exon
GAAAAGCGCATTGCCTCGCTGGATGCTGCCAATGCCCGCCTCATGAGTGCCCTCACACAGCTGAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-Dab2ip:NM_001114125:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.335
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(23.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(19.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: