MmuINT0046469 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35727426-35730992:+
Coord C1 exon
chr2:35727426-35727513
Coord A exon
chr2:35727514-35728057
Coord C2 exon
chr2:35728058-35730992
Length
544 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
AATGCCCTCTTTGCCCACAGGAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTTGATGTCAGTGGAAGAAGAACTGAAGAAGGATCATGCAGAGATGCAAGCAGCTGTAGATTCCAAACAGAAGATCATCGATGCCCAG
Seq A exon
GTTGGGGCTCTGGCTACAGTGTTACAGAGTTTGGGGTAGTTCGAGTGTAACTAGCTTCTCTGGTATCCTTGGTTACACCTCAGTGTAAAAACCATGGACCAGGAACCAAGGTCTCTGGGCTCTGAGGATGCTAACCAGGGACTTATGGAAGTGGAGTAGGCAGGACTAGGAAGGTGAAAGAAGGCTAGGCAGAAGGGCTCTGGTCCCCAAGCCCCTTCACTCACAGCTGTGTCCCTTTCTCTGAATGCCCCAAGAATTGGCAGGTTTGGTTAGAGTGTAAGCTACATAGCCTAGGAAGGAGCTCTGGGTGTGTGACAGTGTGAGAGGAAAGGCTCTGCCTTCGAGCTCAGGTGCTATAGCTCCGCTTTAGCTTTGTATAGGTAGGAGGCAAATTATAAGGCCCCAGTCTGTGATAGCACAGAACCTGCCCAGCTACTCCACAGCTTGGGCCTAACACACTTCTCTGGCCTGTCGTGGTGCTCTCTGCTGGCTACTGCTGGCTAGAGCCCACCTCAAGCATCACTAATGCCCTCTTTGCCCACAG
Seq C2 exon
GAAAAGCGCATTGCCTCGCTGGATGCTGCCAATGCCCGCCTCATGAGTGCCCTCACACAGCTGAAAGAGAGGTACAGCATGCAAGCCCGTAACGGCGTCTCCCCCACCAACCCCACCAAATTGCAGATTACTGAGAACGGCGAGTTCAGAAACAGCAGCAATTGTTAACCTGCCTGAGGAGAGGGGGACTGTGGTGGCCCGGGACAGGGTCTCCGTCAGGAGACTCCCACAGTTGCAGGCTAGCCTGCAGTGGAGGGGGCGTAAGACTGATGGAGCGTGAGACTGAGGGCACAGTGGCCCCCCTTCTCTTTGCCCACCTGAACAGTGGGTGTGGGTAGAGGCAGCGGAGACTGCACTGGGGAGTGGGGCCAGTCTGCAGGGAGGCCTGCCGAATGTGTCTCTGGTTGTTGAGTTTGGTATGTGGCACCTTCTCTCTGAGCAGCCAGGTGCATGTACCCCTCCTTACCCTTTCCCATGGAGGAAGCTACCTGCAAAGGGCTCAAGGAAGGTTTAGGGGCCACTGCTGTGGGTTTCCCATGGCCCCCAGGACCTGATGGAGTAGTTGACAGGCAGAGTGGCCCCTGTTCATCTCTGCCCTGAGCCCCTGCCACTGCATGCAGCTGGTCAGGGACCCTTCCAGGGGGTGAGGAACTGAAGAACAGAACCTCGGTCCTATGCCCATCCCAGACGTGACACCCTCCACCCTCCTTCCCTTCCTTCCTTGCATTGCCAAACAGACAGCACTGCACTTTCTCTGCTGGGCCCTCATACCCGTGGGAGGAGCCATAGCTTCCCACACTTCACATGCGGGCCTGGCTCATGCTCTTGGAACTCCAGAAGCCAGAGAGCTGGGCAGAGGTGGCCAGGTTGCACCATGCGTTGTAGCTGCCTTCTCCAGGGTCCCAGTGTGGCCTGCACAGTGGCCCTGTGGGGAGAGGCCAGCCAGTGCTCACCCTGCAAAGGTGATCTCTCTTCTCTGATAGTTTAAGAAAGAATTCTAAAGCCTGCCGGCCCTGAGAAGGTGGATAACTGTGATTTTTTTTCCTTTCACAGTATGCATTAGAAACAAAAGCCCGCTTGCTCGCTTGCTGGAACACAGGGGCCTTTTAAATTGAGCGAGCGCACTGCATGGGAAATAGCGGCCCTGGAGGATGTTAGACTTGCTCCCTCTCCAAGACAGCAGCAGCCTGCACCAGGCCCCGTGTGCAGTCGCCTCTCCTCACCCTCCCAGCCCCAGCCAAGGACCCAGGCACTGCAGGCAGGGAGGGGCATCCCCCACAGCTGGGGCTGGTTTTCCCCAGCTCTAGGCTGTTCTGTAGCATATCTGTCCCTCCCCCCCCCCCCTTTGTGGGACAGAGAAGGGCAGGAGCTTGGGTCTTTCTTGGGTCCCCATCTGTTCCCACACTCTAGATTCCAAGCCCTGGTTCTGAGTCACCTAGGGCAGGAGCTAGGCTTTGCCCAGGCAGCAGAATGGGGCTAGGCAAGCTGCACTTAATGCTCCTAGAGTCCTCACTAGAAAGCGTGGACATCCTGAGGTGTGGCCTAGCTAGGCTGCGCCCTGTCCTCAGTCCACGATGGACAGGCAAGGGTAAAAGAACCCAGTTAGGCTGCAGACCAATGCTGGGAGAGGGCGTGGCTATCAAGGGTCAGAGACCTCAGGAAGGAAGGAGGTGGGGCTGAGGGCCTGCCACTGCCTCTTCCTGCCCCACTCCTGTCCACACCCCTGCTCCCATGCATTTCAGCAGGGGTGGCCTCTTGGGCAGGGCCTGGCCTGGCCTGGCCTGGCCTGGGTCTTGCCCTTCCACTGCCCAGGGAGCCCTGTTTTCCTCCTCACCCACACTCTCGCCCATGCCTCGTAAAGTGACCTCTGTCTGAGCGCCTCCTAGCAATATGGGGAGGTCCCCAGGCCTGGACAGGAGAGCGCAGGGCCAGATGCAATGGCCCCCTCTGGTGGGGTTGTTAGCTCTCAGGCCGAGAGCCTTATTTACCTAGTGCAAAAACTGTAAAAGTGTACAGACTCTCCACAGATTTTTATCTTAATTGCAAGTCTGCAATATTTTTTTTGTAAATTTTTTTTTTGTAAATGTTCTTGGTGTTTGACTGTAATGGAACTATTTCACCCAAGGGATGTACATAGTCCTTTAGTCCTGGTGCTGCGAGGGCTGGCCAGGACACTGCTCTCACGGTTGATATTAGAGCCTGGAGAACGGTGCTGGGCAGGACAAAGAGCTTTGCAGTCTAGGTGTCTGTCTGTCTGTTTCCTGCCCGGGGCATTGATTCGTTGGCTTTCAAGCATGCTGTTTGGGTGGAAGGTTGATGGGGGCAAATGCCCCAGTGGGGCCAGTAAAGCATCCTCCTGCCCACAGCAACGGCTTGGGGCGTCTGAGCTCTGCTTACAGCAAGGGCTGGAGTTGCCAGAGGCCCTGCTCTGGGAAGACCCTGGCCACTGACACCCAAGATCTGATGGAGAGAGCGGCCCCACCCTTGCCAACACAGACACCTGACCTTTTTGTTCAACTTGTGTGTTAGGGTGAAGGAAACTGCCAAACTTCCTCTGAGTGAAGACCTCTGACTGCCCAGGAGTAGGGGTGGGGACCAGGGCCAGAGCTCAACGTGTACCCCAGCACCTGCCCGAGGGACACTCCTCCCTCATACTCATAGGTCTGGGAGCCAGACTGTCCAGGGAACCAGCCCCTCTTTTCTATATACTCGGCCACAAGGCTACCCGATCCCCCACTGTGCCCAGCTCCCCCTTTTGTAAGTATGTGAAAAGGAAAAATGCAAAGGTTGGATCGGCCGGAGCCCTTCCCTCCAGTCGAGACTTTTAACCCTGTAATAATGTACAGAGAAGTTGTTGGTGTTCGAAGACTCCGTGTGGCTGTGCAATTTCTGTACATTTGCAATTAGAAATATTAAAGATTTATTTAGCTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.494
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(23.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(19.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGATGCAAGCAGCTGTA
R:
CCACTGTGCCCTCAGTCTCA
Band lengths:
348-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types