RnoINT0044834 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15056816-15057557:+
Coord C1 exon
chr3:15056816-15056903
Coord A exon
chr3:15056904-15057392
Coord C2 exon
chr3:15057393-15057557
Length
489 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AACGCCTTCTTTGCCCACAGGAA
3' ss Score
11.54
Exon sequences
Seq C1 exon
GTTGATGTCTGTGGAGGAGGAACTGAAGAAGGATCACGCTGAGATGCAAGCGGCCGTAGACTCCAAACAGAAGATCATCGATGCCCAG
Seq A exon
GTGGGGCTCTGGCTACAGCGATGCAGAGCGTGGGGTAGTGGGAGTGGGACAGCTTCTGGCATCCTCAGTTCCACCTCCGTGTGAACTGTGGACCAAGAACCAAGGTCTCTATGCTCTGAAGATGCTGACCAGGGACTTGTGGGAGTGGAGTAGGCAGAACTGGGGAGGTGAAGGAAGGCGGGACTCTGGCCCCCAAGCCCCTTCCTCTGAATGCCCCTAGGACTGGCAGGTTGGGCTAGACTGTAAGCTACGTAGCCGAGGAAGGAGCTCTGGCTGTGAGCCTGTGAGCCTCAGGTGGCTGTAGCTTGGCCCTGACTTTGAATAAGGTAAGAGGCAGTGATAGCACAGAGCCGTGCCAGCTGGGGCCTAACACACCTGACAGTTACACAGCCCAGTCTTCCTGCCTCTCCTGCCTATCACGATGTTCTCTGCCAGCTACTGCTGGCTCAAGCCCATCCCAAGTGCCACTAACGCCTTCTTTGCCCACAG
Seq C2 exon
GAAAAGCGCATTGCCTCGCTGGACGCTGCCAATGCCCGCCTCATGAGTGCCCTCACACAGCTGAAAGAGAGGTACAGCATGCGAGCCCGTAACGGCGTCTCCCCCACCAACCCCACCAAATTGCAGATTACTGAGAACGGCGAGTTCAGAAACAGCAGCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.7=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCTGTGGAGGAGGAAC
R:
TGCTGCTGTTTCTGAACTCGC
Band lengths:
246-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]