DreINT0054615 @ danRer10
Intron Retention
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12096422-12097563:-
Coord C1 exon
chr8:12097476-12097563
Coord A exon
chr8:12096590-12097475
Coord C2 exon
chr8:12096422-12096589
Length
886 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TAATGGTCAATTCCCAACAGGAG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTTGATGTCGGTCGAAGAGGAGCTGAAGAAAGATCACTCAGACATGCAGGCCATCGTAGACTCCAAACAGAAAATTATCGAAGCCCAG
Seq A exon
GTGAATCCAAAATCTTGTATATAGATTTATAAATTGTATTCAAAATAAAACCTATTGTTTAATATATACATTTTATTAAGTAATTTTTAAAACACATTTTTAAATTAAAATATTAATCAAATAAATGAATGTATTAGTTACAAAATATGTTACTCTGTGTATGTTACAAATCAAATACATTATTTCCAGGTTAATAATCAGATTTGTTACATTCAACATGTTGGTTTGCAGCAAAAAATAAAAATTCTAGAGGCCTTTTGGATGATTTTCAAATCCGACTTGAGTGCTGCTGTCATTAATGCAATACTGCCGCATACTAAACACTAAGAAATCAATGCGCTCTCTTTACTGAAGTTGTTTTGCCGATAATTTAATTTAATGGACAGTTTTCTATTAAATAAGAAACAAGCAGCTATTCATCTAACAGTCTCGGTTGCCTGTGTGAATATTTTGCAAGGTCACAGCGCCCTCTTGTGTTGAGTTTATATTTCAGCATATTGTGAGCGGTTTAATGGTGTTAATGTATTTGAAAGTTTAATGATGATTGCCAGTGTCCTCCGGGGACAATCAGTGTCTCTCGTAAACAGTTTGATGAGCATAAAAACCACCCACTGTGGATTTGCTTCAGCACTCATCCAAATCATTAAAGACTTTCTTAACATCATAGATTTATTTTATAAAGACAAAGCCATCGCCGTGTGAATTTTAATTCCAACTCTGTGAATTCATCTTATGGGTTGTAGACGGTGTAATTAATCTGTAATGATTCCGAGCCAGTCACCTCGTGTCCATTGCAGAGCAGAAAGACTTTAATTAAACATTAAATATCATGCACTGTTAATCACCTTCTCCTATCTGACCTCCATTAATGGTCAATTCCCAACAG
Seq C2 exon
GAGAAGAGAATCGCATCCCTGGATGCCGCCAACGCCCGGCTAATGAGCGCTCTGTCTCAGTTGAAGGATCGTTACAGCATGCAAACCAGGAATGGCATCTCTCCGACAAACCCCACCAAGCTGCAGATCACGGAAAACGGAGAGTTTCGGAATAGCAGCAACTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484:ENSDART00000135812:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.8=43.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCGGTCGAAGAGGAGC
R:
TGCTGCTATTCCGAAACTCTCC
Band lengths:
246-1132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]