BtaINT0046516 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92662979-92664126:+
Coord C1 exon
chr11:92662979-92663066
Coord A exon
chr11:92663067-92663866
Coord C2 exon
chr11:92663867-92664126
Length
800 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
ACGCCTTCTTTGTTCCACAGGAG
3' ss Score
10.19
Exon sequences
Seq C1 exon
GTTGATGTCAGTGGAGGAGGAGCTGAAGAAGGACCACGCGGAGATGCAGGCAGCTGTAGACTCCAAACAGAAGATCATTGACGCTCAG
Seq A exon
GTGTGGGGCGCTGGCCTTTCGGACAGCCACGGGTGTCAAAGGACCTGGGATTAGGAGCGGGTGGCTTTGGCTTCTTCACATCCTCAGTCATACCCCACTGCAGAAGCGAAGGAGGATAGGAGATCAGGATCTCTGCCCCAAGAAGTCAGAGTCGAGGGTCTCAATGGACCACATGCTCACTAGGACAGGCTTTGAAAAGGGCAGGGCTGCTCCTCCCCTGCTTGGGCAGCTTAGTTAGGTATTACCTTTCACCAGGTGTTCTGACCAGAGTAGAAGCTATTGGGAGGGGAATGGGGAAGGCTGGGTGACAGCCGGTGGGGAGAGGGAGCAAGGGAGCTCTTGTTCAGACCCTTGGCTTCCCAACTGCTTTGAGGGGGGAAGACAGTTGAGAGACTGGCTTCCGGTCTCCTTCATCCAGGTCTGTGCCCTTTTCCTCTCCAGCGCCAGTCCTTGCTCAGTCAGGAAACTGCACAGGCTGATGGGAGCTGTGACCTCTGTGTTGCACACACACATGTACACACACACGTGCACACGCACACGAGTGAGGGTGCCTGCTCTCAGGGCTTCAAGGAGCTGGTACATGACACCACGAGGGCCGCTCGTTGGGGTGAGAAGCAGGTGATGAGGTAGAGACACGAGGAAGGCAGGCTCTGCGCGGCCCTCTCCCATGAGGGCGAGCTGCCTCCTCCCGGCTTCAGGACCTCTGCATCCAGCCACAGCTCTGGGGAGACCCCTTTCCTGGCATGGACCCCGCGCCCCCCCCCAACCTAACCCCCGCTGACGCCTTCTTTGTTCCACAG
Seq C2 exon
GAGAAGCGCATCGCTTCACTGGACGCGGCCAACGCGCGCCTCATGAGCGCCCTGACGCAGCTCAAAGAGAGGTACAGCATGCAAGCCCGTAACGGCCTCTCCCCCACCAACCCCACCAAATTGCAGATTACTGAGAACGGCGAGTTCCGAAACAGCAGCAATTGTTAACCTGCCCGAGGAGGGGAGGACTCTGGTGGCCCAGGGCGGGGTCTCGGCCTGGGGAGGAGCAGCGCCGGGGGCCCAGAGGCCGAGGCTCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.6=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCAGTGGAGGAGGAGCT
R:
CTCCTCCCCAGGCCGAGA
Band lengths:
312-1112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development