GgaINT0124838 @ galGal3
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9312558-9315057:+
Coord C1 exon
chr17:9312558-9312645
Coord A exon
chr17:9312646-9314805
Coord C2 exon
chr17:9314806-9315057
Length
2160 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTGTCTGTTTCTTTGCAGGAG
3' ss Score
12.14
Exon sequences
Seq C1 exon
GCTGATGTCAGTTGAGGAGGAGCTGAAGAAAGACCATGCAGAAATGCAGGCTGCCGTGGACTCCAAACAGAAGATCATTGATGCACAG
Seq A exon
GTGAGTCCCTGACACCGAAAGCTGCAGCACTCTGGGGTGACTCTGCCAACGTGCAGCCTCCCTGCTGTGCAGCAGCACCAGATCAAGTGCGGTCAGACCACGTGCATGGGGTGCGTCAGCACAGAGCTGCAGTCAGTGACAGGGTGGGTCAGCCCTCAGCAGGACAGTGTTCTGTTGCCAGAGCATTTGCATTCCTGCAGCTTTTTCCAGCCTTGGCATTTGGCGGGTGACGTGGAGGATGTGGGGGTGGCAACAGGCCGAGCAGCGAGGAGGTGGTTGGAGCAAAGTCTTGAGAAGGGCACAGCCAACAGAAGGGCAGGGGAATGATAGACAAGAGGAGAGCAAACGCACAGAGCAGGGAAGAAAAGCATGCCTGCAGGGCAGGGGAAGCAAGGAGGTGGAGGTAGGGCCTCTAGCTTGGAAGTGCATGGAATGGCAGTGCCAGGGGACTGACCTTGTGCACATGGTCAGCACATGGGAGTCAGCACCCTGCTCCTTGTAGGCATGTACAGGGCCACAGTCAGTTTCTGCAGGACTGTACCCAGACTCCAGGAAGCGCAGTTATTGGTACAGATTAGAATGGCAGAGGGGCAGCAGGTGATAGTGGAAAATACTGTGCTTGGAACAAAGGAACTGAAAATACAGCCCATCATCTTTTCATTTGTTTAGACAGCTTCGGGTTGTGGCTAGGTGCTAGTGAATTGTAGGCTTTCTCTTAATGACCGTATTAATCTCTTGTGAGTCACCACTCATGACTAATTTACTGTATAACTAATTAAAAAGGAGATGAGACGGTGGTAACTTTGTGAAAAGAATCACTGTTTTCCTGTACAGTAATTTGTTCCAAGCCAGTAAATCAGCACACGTTCCCTGCAAAGCCTGGTAGGTAAGGGGGGTGTGGGGCACATAGCTGGAGGCTGCAGCCGGCAGCAGCTCCTCTGGGCCCTTCCCTGTTGTTACCTGTGGGGCTCTCACCCAAGCCTGTGTGGCACACAGTTTTCTGCTTCTCGTCACCTCACACTGTGTGTGATCCTTGGAGTTACACAAGCAAACTGCTGTGCCCCTCTGTGTTGTTTCCATTCTGCCTGCTCACAGCAGAGAGCAGGAATGTGCAGGCATGGCAGGATCAGGCTGCATGCAGCACAGCAGCTCTTGCTCTTGCCCCCATGATACTGCACTGGACCCCTTAGTGTAATCAGTGAGGATAAGCTATGCCATCATAGCCATCCTGGGAGGCCACAAGTCATTTAAGGCATTTATTTACACTAACAAAATCAATTAAACACTGACAGGAATAACCACCTTGGGAGAGAACTATGCTTTAGAACAGGAATCTTATCGTCTTCATAACAGCTGCAGTTAGAGCAAACACCACAATTTCCGTATCATTGAAAAATTAGAAAAAGTACTTTATCTCCATTTTGTTCAGGACCAATTAGACCATAGTATGATAAAATTAATTCACAGATTCTGCTTGTTTAAAAGCCTGATGCGCCACAGCCGCTGTGAGGCAGGCAGTAACCCCTGGGAGCAGGGCAGAAGCTCTGACAGGGATCTCCTGTAGCCAGAGCTGCTCTCTGAATGGGGTCCGAGCTGCAGAACTGCTGCCCAGTGTCCCTGCAGCCATGCAGAACTCTGGTGCTCCCCTGAAGATGCTTCTGGAGCTACCTCCAGAGAGGGTGTTTATTCCTCATAGAAATAATCTTCAAATTACTGTCCTAACCCAGAATTTCAGAGGCTTTCACTCTTAAGTTCCCTGAAGGAAATGCAGGCTTTGTACAAACCCAGCGCAGCTCAGCCCGGCACAGTTCTACTCCAGGCTGCAGCCACAGCCATGCAGTCTGACACTGAGCTGCTGGGAATTTGCAGAGCACCCTGCCCCAGCATCAATCCATGCCGGAACACAGAGGCTTCTGGCCAGGATGTGGCTGCTGTCAGGCCAGCCTGGAGCACGCAGCTTGCAGAGATGTCTGCTCACCTGGCAGCAGCAGGGTAGAACACAGGCAAAGCCATTTGTGGACCTGCTATATCAGCAGAGGGCTGCTGAAGGGTCCTGGTCCCAAAGGCCCATGGGTTGCTAGCTCACAACAACCCATGGCAGCGCAGAGGCAGGTCTCCGTGTGCTTCCACTGACGGTTCCCTCTGTCTGTTTCTTTGCAG
Seq C2 exon
GAGAAACGCATTGCTTCATTGGATGCTGCCAACGCACGGTTAATGAGTGCCCTTACTCAGCTGAAAGAGAGGTACAGCATGCAGACACGTAATGGGATCTCCCCCACAAACCCAACTAAATTGCAGATTACAGAGAATGGAGAATTCAGAAACAGCAGTAATTGTTAACCCGCGGAGGGCGCTGCCGCAGGAGGAGGCCTGGCCAGAGAGACCGTGCAGCAGCAGGTGTGAGCCGCGGCTTCAGACAACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.7=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.7=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]