HsaINT0044761 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124543743-124544680:+
Coord C1 exon
chr9:124543743-124543830
Coord A exon
chr9:124543831-124544609
Coord C2 exon
chr9:124544610-124544680
Length
779 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CACATCCCCATTGTCCACAGGAG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTTGATGTCCGTGGAGGAAGAACTGAAGAAGGACCACGCAGAGATGCAAGCGGCTGTGGACTCCAAACAGAAGATCATTGATGCCCAG
Seq A exon
GTGGGGGCTCCGGCCCTTTGGTCAGCCACAAGAGTTAAAGGGCCTGGGATTAGGAGGGGTGACTAGCCTCTCCATCCTCAGTCATACCTCACTGCAGACACTGAGGGGAATAAGAAACCAGAATCTGCCCTGAGAAGTCAGACCTGTGGTCTTAGTGGGCCACAAGCTCACTAGGACAGGCTGTGAAAGGAGAGAGGCAGCTCCTCCCCTGCCAGGGCTCTTGGCGGGCATTGTCTTTCACCAGGACTGCTGACCAAAGAGTGGAAGCCACCAGGAGGGCAGTGGGGGTAGGAGTGAAGGCAGGCTGGTCAGAGGGAGCAGTGGGGCTCTCGTTCACAACTATGGCATCCGGGCTGCATTGAGGGGAGACGTGAAAGGCTCTGTGGCCCCAGCCTCCTTTACTCAGGGCTGCACCGCTTTCCTTTCACTCACCCAGGAGTAGGCTGGGCCTTGCTCAGGCTGTAAACTGCACAGACCAGGAGCTGTGACCTCTGGTGTGTCATGCACACACATGTGAGCAAGGGTGCCTGCCCTAGGGGCCGCAGGCAGCCCATAGACAGCACTAGAGCTGCTGCATTTGGGCTGATAAGCAGGCAGCGAGGCTGTGTCCATGATGCTGCAGAGGCCTCTGCCTACCTTCTCTTGCCAGCTGCTCACAGCCCGGAGCCTGCCTGCCACCCTCATCTCCAGGCCACCCCCTTCCCCGATGCTTGTCGTAGGTATACACAGCCCTAAGGAGCCTGTCCCATGACCCCCGCTCACATCCCCATTGTCCACAG
Seq C2 exon
GAGAAGCGCATTGCCTCGTTGGATGCCGCCAATGCCCGCCTCATGAGTGCCCTGACCCAGCTGAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.6=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.7=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)