MmuINT0058031 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6441122-6449257:-
Coord C1 exon
chr18:6448905-6449257
Coord A exon
chr18:6441244-6448904
Coord C2 exon
chr18:6441122-6441243
Length
7661 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
GTCTCCTTATTTATGTTCAGCAT
3' ss Score
5.89
Exon sequences
Seq C1 exon
GGTCGTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATTTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAACCCAATACCTCGGACAGATCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTGCCTGACAGTGACAGTGGTGAACTCTCCAGTAGAAAGTTACACAGGAGTATCAGTCGAGCAGGAGCAGCACAGCCTGGGGCCCACACGTGCAGCACCTCCACCCAGAACAGAAGTAGCAGTGGCTCAGCACACTGTG
Seq A exon
GTACGTTCATCTGTGGTACCCATTGCTGTACCAGGGCGGGGCCTTCCATCTTGTTGAGGATGTGGTGTTTTATTCTCATACTGAGATGCTTAAGGATTTCTTTGAATTCTCCTCAGTAGTGCTGTTGCTCTGTGAGTTTGTGTGTGTGTATCTTTCCTTAACCACAGCCAAAAAGAGGTGGTATGTGGTATGTTAATACATATTTAATGTTTAATTTGTTACCTTAAGGCAGCCCATGAACCACAAGATTGATTTTCAAATAATAAAATAAAAGGGACCCCAAGTTGTTAGTGGTATGTACTTGAACATCTAATCCGGTCTGCTTAAATTTTGTGGCCAGTAGTCAGTAGTTACACGTGAACTTACACTGACACTCGTTCAGAATAAAGACCAGAGAAGCTGACTTAATATTTTGGAGACATTTTTAGATAATCCCTACAGGGTGACCAAAACACTGGAAACAGTGCCATGCCCTGTGACTTTCTATTTTAAACTACTGAGTCCACATTATCTGAGTTGTTAAAATTATAAAAGCTTACTGTCAGCGTGGCGCAGCAGATTAAGATCCCGAGTGCCAAGCCTGACAGCCTGAGTTCAGTGCCCAGGACCCACACGGTAGAAGGAAAGGGTCCCACTCCTTCAGTTTGTCTTCTGGCCTCTGGACATGTGCTGTGGCATGTGCATGCACACACTCATACATACATACAATAAATGAAATCTTTTGGGGTATTTTTACTGGTGGTAGTTGTTTTGGTAGGTATTCTGAAAAAGGGTTTCACTGTAGTTCTGGCTGTCCTGAAACCACTTTGTAGGCCAGGCTGGCCTTACACTCAGAGATCTGCCTGGTTCTGCTCCTGAGATTAAAGCAAGCACCACCATGCCTGGCTTATGTTTACAATATTTTAAAATCATTTCATTAAAGTTCTTTTAGGATGATTTTAATACAGATTTTCTTTTTTTTTTTTTTTTTTTTCTCTTTTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCATGGCTGTCCTGGAAGTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGCGCCACCACCACCCGGCTAATACAGATTTTCTAAAAGAGGATTGTTTCCCTAATTACATAATTAGGTTACAATTAAAGTGTTTTTGATTGATAGATAGATAGATATTTATTTACACTTAAAATGTTATCCCCTTTCCTGGTTTTCCCCTCTGAAGACCCCCTATCCCCTCCCCTCCCCTCCCCCCTGCTCACCAACCCAACCATTCCTGCTTCCTGGCTCTGGCATTCCCCTACACTCAGGCATAGAACCTCCACACAGGGCCAAGGGCCTCTCCTCCCATTGATGACCGACTAGGCCATCCTCTGCTACATATGCAGCTGGAGCCCTGAATCCCACCATGTGAACTCTTTGGTTGGTGGCTTAGTCCCTAGGAGCTCTCGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTACAAACCCCTTCAGCCACCTGGGTACTTTCTCTAGCTCCTCCATTGTGTACCCTGTGCTCAATCCAATGGTTGGCTGTGAGCATCCACCTCTGTATTTGTCAGGCACTGGTAGAGCCTCTCAGGAGACAGCTATATCAGGCTTCTGTAGTTTGGGGGACTTTAATGATTGTAATTCCACTAATTTTACTACTCTTTTTCTGTCCTGGATAGTCCTTAAAGTCAGGCTGAAGAGCTGGTGTAGTGAAGGCTTAACTGACACAGGTGTGGGGAGTTCAAAAGTGGAAACTCTTAATTGGTTCCCCAAAAATATTTTTGAAGATGTATGAAATTTTTTTGAGATTTTTATGGAGAAAGTAGCTATGTTCTATCAACCCACATCATGTCGCTCCTGTGGTGGAGACACTGAAGAGCATGACAGACCTCCAGATTGCATTTCAGTCTATGGAACGAGGTGTGCTGGCATGACTTACAGAGGCATGTCAGTGCCAGTTGCAAACTTTGCTGATTTGTCTCCCAAACATCATTAAAAGGTAGACATTAGCAAAAGTTACCCAAAAAAGCCTTTCATAGTTATGCAGCTTTTCTCCATAATCATCATTTGATAGTAGGGCCTTTTTAAATAATATGTTTATTTTCAAATATACTTAGAGAATAAATGCCTACAGGCTACCATAGAGTTACACTCTGTTTTCTTATTGGGATAGATATTCATGAGATCTGAGGCCCTCTCTGTGGCTCTACAAATTATGTCATATGTGCATTTAACATAAGTGAGGTCTGCTAGCTGCCCCTGAAGACAGAAAAGACAATCCAGCTATTTGCTTGTTACATGGGAGTCGAAGTGTTCTCCAGAGACAGCCTAGATCTGCCGAGGGTCTCATGAGTGTCAGCCAGGTCCTCTCCAAAAGCATCAGCAGGCTAGATCTTAGCTGTGCTGACTCTGCCATCCTGTCAGATGGACAGGAGTCAGCTTCAAATGTAACCACTTCTGATTATTCAGTTACTGACTCTGATTGAATCGAAACTTACAAGTGATGCACACCCCCACCAGGCTCCTTTTCTAAGTAGTTATTAGTGAATTGTATACACATTTTTTAATAGGAAATTCCAACTGAAGGTACCAGGAGTGTACTCACTTCCTCAAAGAGTGCCCAGTTGTAAGGCTTCTCACTGCTCGGGGTCCCTTCAGCTTGCTACTCAGTCTTGGCCATTTCACAACTCTGCACCCATGGAGGGTGTTCTGAGTAGGGTGTGAGGTAGCCTCCAAGAAGGTAATGTAAATGCTGTGTCCCCTTTGTCCTGTGTGTCAGAAGGGGAGCTTGGGGAGACTTAGTGATGGGGACTTTGAATGTCTAGGGCTAGATCTACATAGGGGTAGGATAAATTGTTTTTAATGATCGTTAGTTAATACATGATTTGGACTGGTTTCAAATAGTTTTCTGGGCTTTTATTAAGCTATAATAGCATCTTTTCAGTGTTTGCTCAGTGGTTGAGAATCCATCTGTTCTGTGCATTTGAAATTGGAGGGTTATCAAACTACAATAATTAGATGAGACCCTCATACAAGGGCTAGCAAGCAACATGGCTTAATAGGTAAAGGCTACATACCACCAAGCATGCCATCCCAATTCTATCCCTAGAGCCCACGTGGTAAAAGGAGAGAATCAACTCCCACAAGTTGTTCTTTGTCCTCCTGATGCACACTGTCTCTCTCAGAGAGCAAAAGAGACACAGACAGACAGGGGAGAGGGTATGAGTGTCTAGATGATTCAGAAACACTTAAAACTCCTACAACAGAGATGTCGCTAGTACTTGAAATCTTAGCTTCCAGTAAAATTGAAATCAACATCATTGTAAGTTATTTTTCTAACTCAAACTATCTGTAACAGTCTGCTTTATTTTTGTAAGCAACAGAAGTTCTATAGATAGAAAGAATTACTGCATTTGATATGGAAAGGACTGCAGTCCTGTGCAGTGGTTATTGTTACTTTGTGTAAGTCTACGAAACCCTAAGCTTATTTCAAGGGCTTTCTAATACAGAATCTTTTCTGGAAGGTGACCTTTCTCCATGACATTGTATGTGATGTGCTGTGAATTCAGCAGGTGTATGTAAATATGTAAATGTTACCGAGGCATCACGGACGGAGTAGCACTGGGCTAGAGAAATGTCACATTGAAGTCATAGCCAGGCACACTCAGCTCTGACCCAGCATGCTGACAGTTGAATTGCAACACACCTTGGTTTTCAAGTCGGGTTTTTAGGTGGGCTGATAAGGGCTTGGGAAGCTTTTTGATTTCAGTTCCCTAATACAAAGATCCTACTTTAGTAACTAGACCATTTCATATCGTAGTTATTTTGCTTGGGTTTTTGTTTGGTTTTGTGGGGCTGAGGATCGGGTCTAGAGTCTCCTGCACACTGGTAAATGCTGCGCCACTGAGCTACATCCCCAGCTTTTGTTTTCAGTGCCTTTTTGGGTCAGCCTGTTAGAATTAGGAAAGATCTTCAGATTCAAAGGTTTTTAATGAAATGTAAATGTCTTCCATTTGAAACAGTTCATTTCTTGCTGATGATACGTGTCTCCCTTCCCACTTAGGTAATTTGCTGCAGGGTCAGGGGTGTGCCTGAAGGGCCTTAGACAATACCTGGTACTAGAACACATTTCCCTATTCTTGGAGTTGGCTTGTTTCAGAGTACTACCCCAGAGAATTAGAGACTCCTAAAAACCTGGTGGTTTCATGGTGTCTGTTTCTGATGTGAGGAAATAGAACAGATGAAATTATTCTACATTAAAAGAGCTTGCTCAGAAAACTTATCCATACACTACCAAAAGCAGCTTTCTTCAGTTCAGAGTTGTGTTTTCTCATGTGATCATGTTAAGTGTGTTCACTGTCTGCTGTCACACTGTTCACCAAAAATAGTCCATTTCCTTCCCCAGTTCAATGCGCTTAGCTTTCCTATCTTAAAAATATTGATCTAGAACTGTTTTCCTGTTTTAACTTTGAAATCTCACTATTGGTGGTGCTTGCTCTCCTTGTGTGTTTTCCCCCAGGACCTCAGCCTCATGTGCAGTGAGAGGTTACAGGACGGCATCGGGTCTGAGGGCCTCATGCGCAGTGAGAGGTTACAGGACAGCATCGGGTCTGAGGGCCTCATGCGCAGTGAGAGGTTACAGGACGGCATCGGGTCTGAGGGCCTCATGTGCAGTGAGAGGTTACAGGACGGCATCGGGTCTGAGGGCCTCATGCGCAGTGAGAGGTTACAGGACGGCCATCGGGTCTGAGGACCTCGTTGACTACAGCTCTTTTGGTTCTATAAAGCAGTTGTGATTCTAGATTTGCTTTAGTTGGCTCTGCCCACCATTTGTGGATTAAATTTGACTGTTTCATTTTATCTGAAGTAGAGGTATAGCTGGAAACTTTCTGCCTTGATGCCCCAGTTCATTAGTAGAAGTTTGAGAAAATAAGGTTGCTTTCATTTATTTCATGGAACAGTTGGTTAGACCTTAGAGTAAGAATGGATTAGGGGCTTTGAATGCTTCTACAGCCTCTGTTATAAAATAAGAATATAAAATCCAGTTCACATTTAATTATCCACATTTACTACCTTACCTTCATACAAATGCACGTTCTTTTAGAATGCAATTTTATTTCTGAGAGGGAGCTAAGAGAATTTTGGTATCCACCTAAGTTTAATCCTTGTCACGTTTGCACGAAGATGTTGAGCCACTACAGGTGGCAGGCACACTCTTCTGGGTCAGGGCTCTATTGTGCTGCATTTGTATTTCTTTCTCACTGCCAGCCTCTTTGTTGCTGTTTTAATTACAGAAACATCCAGGCCAGATTTTACAACTAGACTCTAGGTAGAATAGTATCATCTAAGAAACAGTGATCTCAGATACTGAGCTGACTATCTTGTGTGTGTGTGGGGGGGGGGGGGGGGGGTGTCTTGTGTCTTTATCTCTGCGTCTGCACTGGCAGGAGACAGATATTAAAAAGTAGGTTGGCTGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTGGATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCCTATGCCCTCTTCTAGACTGTCTGAACAGCGACAGTGTTTTCATATACATAAAATAATAAATAAATCTTTAAAAAAAAAAAGTGAGGTTGGCACACCTGCACACAGAAACTGGGGTGACGTTTAACCAGGGCAAAAAAGTATTTGAAAGTTTATTCAACGTTGATTCCCAGTTCATTTACCACTAAATGTTTAACTGAAGCACAAATACCATCAAAGACACACAGAAAACATTTTTGCAGGGAGAAAACATTGCATCTGTTTACTGTTTGCCTTCACTCACAAGAGGTGGTGAGCAATGACTGGATCATTTTCCTAGGTATGAAATGCCTGACCCTTCCAGAAAAAACAAAAAAAACCTTTTTTTTAAAAAAATTACTGAATATTGCCTACTGAAAAAGTAAAGGCTGAGGCAGCACATTTGATTTTAGGAAGTTAAAGTATTATGTTAACTCTCAACCATCATTCTGGGTAGCATTCATTTTTGTAGCTTTTTTTCATCATTTTGGCCCAGCTCAATTCTGTCACATGTCAGTGTCTTGGTAGCAGGAAATACTTCTGTCAGTATTTAGTGAATATCATAATATCAGTAAGTCTCCCCATAGAATCTGTAGATTGCAAATGTTAGAAAAGACTTACAAATCAGATACCAACTAAGTGGAGCTGTAACACTCAAAAAATAAGAGAATCAATAGGAGTATTTTTCTAGGGAGAAGTGTGGGCCATGAGCTTAATTCAGTTGAGGAACGTGTGAAGGTTCTGGTAGCCTAACGGTCTTCTGGGTACATTGAAAGTGTGGTAGATGTGTTCCTATTGTCCAGTGCCACCAGGCAGACCCTGGACCCAGGACCCTGGAGGTTAGTAAAGATCCCTCCCAAGTTACAGGTGAAATTCAGAAAACTTGATGGGATGATGATATTCCAACTAGCGGAGCACTTCATAGCAAGTCAGGTGGGCATGTTTGAAATGGCAGGCTTGAGCCCCAGGAACGGTGGATAATAGATGCCCTGGTACCATAGGATGTAGCGTAACTCTATTGTTTTGGGTTTTGGTTTTGGTTTGTTTGTGTGTTTGGTTTTTTTTTTTTTTTTTTTTTGATTGATTGTTTGGGGTTTTGGGGGGAATTTTTTGGTTTTGGTTTGTTTAAGTAACTTCTACTCGGAATGGTTTCTTTAAGAAGCCTTTACTGTCAGGTGGTTGTGATACTATTTGCTTTCTTTTTTCTTCTCCCCTCCCCCCCTTTCTTTTTAACCTGGCAAAGGAAAAGAATAAAGAAACAGGTTTCCTTTTTAAAGTTGCACACACTTTGGGGGGTAATAAATGAACATTTTTTTTGTTTGTCTTTTTTAGAACTGAGCTCTCCATAGACACACATAGTAGCATAACACAGTGTCTGTCCTCAGGCTTCACTCTGTACAGTAATCAGCATAACTCCGTTCTTATTGACTGGATTTTGTCCAGGTGGGTTAACTGGGTGGGGCAAGTTCATTAACCTTAATCCTGGTACTTCTTTTCTTCCTGTTAAACTTGAAAGATAAGTTCTCCTGTCTAAGTATTAAACTATCAGATTTACTTTTTATGTAGAAGAAAGTTTTGCAATGATTGGAATAAGAAGCTATGTAGACTTTAGTGTTTGTACACAGCTGTTGGGAAGGCCCGGGCCTCGGTATGACGATCTGGACAAAATAGAAGCGGAATGCTGTTTACCAGGTTTCACCTCATACTCACTGCAAAGTGCATCTCCAAGAGTGTGGACTGGGAGCCCAAGAGCACTTTCTGCACTGTCCAGCACAGTGTCACAGCTGAAAAAAGTAGTGGCTTTTTCTTTAACTTGAAGCCACTTTGGTTAAATGTGGCAGAAGATGCTCGTTTGCCTCTGGGAGCCATCTCTGGCAGCATCATTTCTATCCAAATGCTTCCATTTTGCACAAAAACATCTTTTTCTTCTGCTGAATTTTTAATGTTGTAAGGCGTCTGGTGTCTGTGCATCTTGTGAACTGTCTCCTTATTTATGTTCAG
Seq C2 exon
CATTCACAGCCGAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCAGCAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=NA C2=0.797
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
NA
C2:
PF067527=E_Pc_C=PU(17.2=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types