MmuINT0078337 @ mm10
Intron Retention
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80027033-80027727:+
Coord C1 exon
chr10:80027033-80027205
Coord A exon
chr10:80027206-80027538
Coord C2 exon
chr10:80027539-80027727
Length
333 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GACATTTTGTCATCCCTCAGTGC
3' ss Score
7.83
Exon sequences
Seq C1 exon
CTGACCTCAATGGCATGGACCCCGAGTTACCTGTGGCCATGCCCAGTGGACCCTTCCGCCATGTGGGATTGTCCAAGGCAGCCCGCACACACCGACTTCGCAAACTGCGCACGCCAGCCAAGTGCAGAGAGTGTAACAGCTATGTGTACTTCCAAGGAGCTGAATGTGAAGAG
Seq A exon
GTGTGTGGGTGCCCTGGGTGTCATCACGGATCAGGACTGAGGCTCAGTGAGTAGATCAGGGGCTGGTCATGCAAGTGTAAAGCTCTAGGTTCCGGTTCCAGTATCAGGACTTCAGAGTCATCCTTGGCTACAGAGCAAGTCTGAGCCAACCTGGGCTACATGACACCCTGTCTCAGAAAGATCAAAATAGCCCGTGAAAGGCAGGGGAGGTTTTAGGTCTGACAAGGTTCTCCAGGTGCAGGGATCCTACAGGGCAAAGGCCCCAGGATTGTGGAAGTGGGGCCCAGCATTTACAGTAGATGTCTGGAAAAGTGACATTTTGTCATCCCTCAG
Seq C2 exon
TGCTGTCTGGCTTGTCACAAAAAGTGTTTGGAGACCCTGGCCATCCAGTGTGGCCACAAGAAGCTTCAGGGCCGCCTGCAGCTCTTTGGACAAGACTTCAGCCAGGCAGCCCTCAGCACCCCTGATGGGGTGCCCTTCATTGTCAAAAAATGTGTCTGTGAGATTGAGCGGCGGGCACTGCACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697:ENSMUST00000099501:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(57.1=48.3)
A:
NA
C2:
PF0013017=C1_1=PD(38.8=30.2),PF0062022=RhoGAP=PU(10.4=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTCAATGGCATGGACC
R:
GCCGCTCAATCTCACAGACAC
Band lengths:
345-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types