RnoINT0020261 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12730508-12731202:-
Coord C1 exon
chr7:12731030-12731202
Coord A exon
chr7:12730697-12731029
Coord C2 exon
chr7:12730508-12730696
Length
333 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CCTTTTTTTTCATCTCTCAGTGC
3' ss Score
10.03
Exon sequences
Seq C1 exon
CTGACCTCAATGGCATGGATCCCGAGTTACCTGTTGCCATGCCCAGTGGACCCTTCCGCCATGTGGGATTGTCCAAGGCAGCCCGCACACACCGACTTCGCAAGCTGCGAACGCCGGCCAAGTGCAGAGAGTGTAACAGCTACGTGTACTTCCAAGGGGCCGAATGTGAAGAG
Seq A exon
GTGTGTGGGTACCCTGATGTTGTCAAAGATCAGGACTGGGGTTCAGTGGATGGATCAGCGGCTGGCGGTGCAAGTACAAAGCTCTAGGTTCTGGTTCCAGTATCAGGACTTCAGAGTCATCCTTGGCTACAGTGCAAGTCTAAGCCAACCTGGGCTACGTGAGACCCTGTCTCAGAAAGATCAAAATGGCCAGTGAAGGGCAGGGGAGGTTTCTGGTCTGACAAGGTACTCTGGGGCAGGGAGCCTCCAGGGCATAAGTCCCAGAATTGTGGAAGTGAGGCCTGGCATTTACAGTAGGTGTCCGGAAAAGTGACCTTTTTTTTCATCTCTCAG
Seq C2 exon
TGCTGTCTGGCTTGTCACAAAAAGTGTTTGGAGACCCTGGCTATCCAGTGTGGTCACAAGAAGCTTCAGGGCCGCCTGCAGCTGTTTGGTCAAGACTTCAGCCAGGCAGCCCACAGCACCCCTGATGGGGTGCCCTTCATTATTAAAAAGTGTGTCTGTGAGATTGAGCGGCGGGCACTGCACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(57.1=48.3)
A:
NA
C2:
PF0013017=C1_1=PD(38.8=30.2),PF0062022=RhoGAP=PU(10.4=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAATGGCATGGATCCC
R:
GCCGCTCAATCTCACAGACAC
Band lengths:
343-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]