MmuINT0123166 @ mm9
Intron Retention
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3535462-3536002:+
Coord C1 exon
chr8:3535462-3535630
Coord A exon
chr8:3535631-3535819
Coord C2 exon
chr8:3535820-3536002
Length
189 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCTGTCTCTGTCTTCCATAGCTG
3' ss Score
11.69
Exon sequences
Seq C1 exon
CATTCAAGAATTCCGGCTGTCAGGGTGGTTGGCCCAGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAACTGACACATCCCTGACGCCTTGGACCGTCCGTTGTCTGCGCCAGGCCGACTGCATCCTCATTGTGGGCCTGGGGGACCAGGAACCCACTGTTGGCCAG
Seq A exon
GTCTGGAGACTGTATGCACTGATTACCCACACATACACCTCAGTCTTCCCCTCAGGATCTCATCCCTTGTCCTTCCGTGCCTGTGGAAGGCCATGTACACTCATGCTGCTGTTCTGTGAGGGAGCTGAGCTTTGCCGGGTGTGGGTAGAGAAGGTATCAATGACCTCCACCTGTCTCTGTCTTCCATAG
Seq C2 exon
CTGGAGCAAATGTTAGAGAACACTGCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCACCGGGAGGAAGGCCCTGGTCCCACGCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTGCTCAGGGCACCTGCACCTGCGCTGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-Pnpla6:NM_015801:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCCAGCAGGAAGATG
R:
CGCATGTTGAGCCACTCTACA
Band lengths:
252-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: