RnoINT0114508 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2088964-2089503:+
Coord C1 exon
chr12:2088964-2089132
Coord A exon
chr12:2089133-2089320
Coord C2 exon
chr12:2089321-2089503
Length
188 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCTGTCTCTGTCTTCCGTAGCTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
CATTCAAGAATTCCGGCTGTCAGGGTGGCTGGCTCAGCAGGAAGATGCCCATCGAATTGTACTCTACCAAACTGACACGTCCCTGACGCCTTGGACCGTCCGTTGCCTCCGCCAGGCCGACTGCATCCTCATTGTGGGCCTGGGGGACCAGGAACCCACTGTCGGTCAG
Seq A exon
GTCTGGAGACTTTATACACCTATTGCACACACATAGACCGCAGTCTTCCCTCCGGATCTCATCCCTTGTCCCCCTGTGCCTGTATACGGCCATGTCCGCTCATGCTGCTGTTCTGTGAGGGAGCCGAGCTTGGTCGGGTGTGGGTAGAGAAGGTATCAATGGCCTCCACCTGTCTCTGTCTTCCGTAG
Seq C2 exon
CTGGAACAAATGCTGGAGAACACTGCCGTGCGTGCCTTGAAGCAGCTGGTTTTGCTGCACCGGGAGGAAGGCCCTGGGCCCACGCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTGCTCTGGACACCTGCACCTCCGCTGTCCTCGCCGCCTCTTCTCGCGTCGCAGCCCAGCTAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGATGCCCATCGAAT
R:
CGCATGTTGAGCCACTCTACA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]