GgaINT0004585 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60656577-60657091:+
Coord C1 exon
chrUn_random:60656577-60656745
Coord A exon
chrUn_random:60656746-60657052
Coord C2 exon
chrUn_random:60657053-60657091
Length
307 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCTGCTGGTGTTGTCCACAGCTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CATCCATGAGTACCGCCTGTCGGGCTGGCTGGCCCAGCAAGAAGACATCCATCGCATCGTGCTCTACCAAACCGACTGCACTCTGACGCCGTGGACCGTGCGCTGCATCCGGCAGGCGGACTGCATCCTCATCGTTGGGTTGGGTGACCAGGAGCCAGCGCTCGGAGAG
Seq A exon
GTGAGGGATGTGTGATGAGGTGGGCACGGCAGGTGGAACCCAATGCCAAATGGGTGGACGTGGCAGGGACAGCTCAACTCCAAATGGAGTGGACGTGACGTGGACAACCCAATGCTAAATGGGTAACGTGGATGGACAGCCCGACACCAAATGAGTGGACGTGGCCTAGACAGCCCAGTGCCAAACGGGGTGAACATGGTGTGGCAACCCAGTGCCAAATGGGTGGACCTGGCAGGAACAACTCAATGCTGAACGGGGTGGACGTGATGTGGACAACCCAGTACCAAGCTGCTGGTGTTGTCCACAG
Seq C2 exon
CTGGAGCCGATGCTGGAGAACACGGCGGTGCGTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGAGTACCGCCTGTC
R:
CACCGCCGTGTTCTCCAG
Band lengths:
199-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]